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Retrieve BLAST result
Streptococcus pneumoniae

The Sanger Institute has been funded to sequence several strains of S. pneumoniae, both by traditional capillary sequencing methods and using new rapid sequencing technologies.

Please use the project specific links below to view the project specific pages for strains sequenced by traditional methods:

S. pneumoniae type 23F (Spanish 23F-1)


S. pneumoniae strains INV104B, INV200 and OXC141


454 Sequencing Projects

454/Roche GS20 and FLX. Reads were assembled into contigs using the 454 proprietary software newbler, version 1.1. Contigs generated by mapped assemblies and de novo assemblies are available below.

Strain fold coverage de novo (fasta/quality) mapped (fasta/quality)
021198 29.7x seq
qual
seq
qual
032672 18.8x seq
qual
seq
qual
033038 13.4x seq
qual
seq
qual
034156 20.0x seq
qual
seq
qual
034183 15.2x seq
qual
seq
qual
061370 12.1x seq
qual
seq
qual
072838 24.7x seq
qual
seq
qual
994038 24.2x seq
qual
seq
qual
994039 30.1x seq
qual
seq
qual
A45 11.1x seq
qual
seq
qual
NCTC7465 8.7x seq
qual
seq
qual
P1041 7.0x seq
qual
seq
qual

Finishing warning

Please note that although finishing has begun, the assembly database may still contain errors and misassemblies, and E. coli and vector contamination. The contig numbers are not stable, and will vary with each data release. The sequences in the shotgun database are single reads from ABI sequencers; they will contain errors, along with both E. coli and vector contamination.


Data Release Statement

This sequencing centre plans on publishing the completed and annotated sequences in a peer-reviewed journal as soon as possible. Permission of the principal investigator should be obtained before publishing analyses of the sequence/open reading frames/genes on a chromosome or genome scale.


Sequencing enquiries

Please address all sequencing enquiries to: parkhill@sanger.ac.uk

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Last Modified Fri Jun 6 13:49:18 2008

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