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Retrieve BLAST result
Serratia marcescens

The Sanger Institute has been funded by the Wellcome Trust, and CNRS, to sequence the genome of Serratia marcescens strain Db11, in collaboration with Dr. Jonathan Ewbank of the Centre d'Immunologie de Marseille Luminy.

Serratia marcescens is a broad host-range pathogen, and is also capable of opportunistic infections of humans. As a member of the Enterobacteriaceae, it is related to Escherichia and Shigella, Salmonella and Yersinia.

The genome is now complete and consists of a single circular chromosome of 5,113,802 bp with a G+C content of 59.51%.

The sequence is available for searching on our Blast Server, or for download from our FTP site.

The shotgun reads are still available. The database contains 80,227 reads totalling 51.619 Mb and giving a theoretical coverage of 99.99% of the genome.



Data Release Statement

This sequencing centre plans on publishing the completed and annotated sequences in a peer-reviewed journal as soon as possible. Permission of the principal investigator should be obtained before publishing analyses of the sequence/open reading frames/genes on a chromosome or genome scale.



Finished Sequence and Preliminary Annotation
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  o  The complete S. marcescens chromosome sequence and gene prediction in Artemis format.
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    Disclaimer. Preliminary annotation will change, although the systematic gene names will remain constant for CDS retained in the final annotation. For publication purposes please refer to our data release policy.


Statement on annotation

Annotation of the sequence is ongoing, and the full annotation will be released upon publication. Please note that, although the sequence is finished, and we believe it to be accurate, it is possible that errors and missassemblies may remain. The sequence should be considered as preliminary until final publication. We would ask users of the data to read our Data release policy and Guidelines on use of data in publications


Shotgun assembly warning

Please note that the sequences in the shotgun database are single reads from ABI sequencers; they will contain errors, along with both E. coli and vector contamination.

Please address all sequencing enquiries to Nick Thomson (nrt@sanger.ac.uk) or Julian Parkhill (parkhill@sanger.ac.uk).

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Last Modified Mon Jan 29 14:28:09 2007

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