| Genomic and phenotypic variation in epidemic-spanning Salmonella enterica serovar Enteritidis isolates. Betancor L, Yim L, Fookes M, Martinez A, Thomson NR, Ivens A, Peters S, Bryant C, Algorta G, Kariuki S, Schelotto F, Maskell D, Dougan G, Chabalgoity JA BMC Microbiol. 2009;9;237. PMID: 19922635 DOI: 10.1186/1471-2180-9-237 |
| Genome watch: Probiotics stick it to the man. Walker A Nat Rev Microbiol. 2009;7;843. PMID: 19915577 DOI: 10.1038/nrmicro2271 |
| Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype. Kingsley RA, Msefula CL, Thomson NR, Kariuki S, Holt KE, Gordon MA, Harris D, Clarke L, Whitehead S, Sangal V, Marsh K, Achtman M, Molyneux ME, Cormican M, Parkhill J, Maclennan CA, Heyderman RS, Dougan G Genome Res. 2009;. PMID: 19901036 DOI: 10.1101/gr.091017.109 |
| The Citrobacter rodentium genome sequence reveals convergent evolution with human pathogenic Escherichia coli. Petty NK, Bulgin R, Crepin VF, Cerdeño-Tárraga AM, Schroeder GN, Quail MA, Lennard N, Corton C, Barron A, Clark L, Toribio AL, Parkhill J, Dougan G, Frankel G, Thomson NR J Bacteriol. 2009;. PMID: 19897651 DOI: 10.1128/JB.01144-09 |
| TriTrypDB: a functional genomic resource for the Trypanosomatidae. Aslett M, Aurrecoechea C, Berriman M, Brestelli J, Brunk BP, Carrington M, Depledge DP, Fischer S, Gajria B, Gao X, Gardner MJ, Gingle A, Grant G, Harb OS, Heiges M, Hertz-Fowler C, Houston R, Innamorato F, Iodice J, Kissinger JC, Kraemer E, Li W, Logan FJ, Miller JA, Mitra S, Myler PJ, Nayak V, Pennington C, Phan I, Pinney DF, Ramasamy G, Rogers MB, Roos DS, Ross C, Sivam D, Smith DF, Srinivasamoorthy G, Stoeckert CJ, Subramanian S, Thibodeau R, Tivey A, Treatman C, Velarde G, Wang H Nucleic Acids Res. 2009;. PMID: 19843604 DOI: 10.1093/nar/gkp851 |
| Unity in diversity: lessons from Candida. Hertz-Fowler C, Pain A Nat Rev Microbiol. 2009;7;763. PMID: 19834478 DOI: 10.1038/nrmicro2253 |
| Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants. Langridge GC, Phan MD, Turner DJ, Perkins TT, Parts L, Haase J, Charles I, Maskell DJ, Peters SE, Dougan G, Wain J, Parkhill J, Turner AK Genome Res. 2009;. PMID: 19826075 DOI: 10.1101/gr.097097.109 |
| Genomics. Genome project standards in a new era of sequencing. Chain PS, Grafham DV, Fulton RS, Fitzgerald MG, Hostetler J, Muzny D, Ali J, Birren B, Bruce DC, Buhay C, Cole JR, Ding Y, Dugan S, Field D, Garrity GM, Gibbs R, Graves T, Han CS, Harrison SH, Highlander S, Hugenholtz P, Khouri HM, Kodira CD, Kolker E, Kyrpides NC, Lang D, Lapidus A, Malfatti SA, Markowitz V, Metha T, Nelson KE, Parkhill J, Pitluck S, Qin X, Read TD, Schmutz J, Sozhamannan S, Sterk P, Strausberg RL, Sutton G, Thomson NR, Tiedje JM, Weinstock G, Wollam A, Genomic Standards Consortium Human Microbiome Project Jumpstart Consortium , Detter JC Science. 2009;326;236-7. PMID: 19815760 DOI: 10.1126/science.1180614 |
| A simple method for directional transcriptome sequencing using Illumina technology. Croucher NJ, Fookes MC, Perkins TT, Turner DJ, Marguerat SB, Keane T, Quail MA, He M, Assefa S, Bähler J, Kingsley RA, Parkhill J, Bentley SD, Dougan G, Thomson NR Nucleic Acids Res. 2009;. PMID: 19815668 DOI: 10.1093/nar/gkp811 |
| Comparative genome and phenotypic analysis of Clostridium difficile 027 strains provides insight into the evolution of a hypervirulent bacterium. Stabler RA, He M, Dawson L, Martin M, Valiente E, Corton C, Lawley TD, Sebaihia M, Quail MA, Rose G, Gerding DN, Gibert M, Popoff MR, Parkhill J, Dougan G, Wren BW Genome Biol. 2009;10;R102. PMID: 19781061 DOI: 10.1186/gb-2009-10-9-r102 |
| A broad host range flagellum-dependent phage mediates high-efficiency generalized transduction in, and between, Serratia and Pantoea. Evans TJ, Crow MA, Williamson NR, Orme WZ, Thomson NR, Komitopoulou E, Salmond GP Microbiology. 2009;. PMID: 19778959 DOI: 10.1099/mic.0.032797-0 |
| Comparative genomics of the fungal pathogens Candida dubliniensis and Candida albicans. Jackson AP, Gamble JA, Yeomans T, Moran GP, Saunders D, Harris D, Aslett M, Barrell JF, Butler G, Citiulo F, Coleman DC, de Groot PW, Goodwin TJ, Quail MA, McQuillan J, Munro CA, Pain A, Poulter RT, Rajandream MA, Renauld H, Spiering MJ, Tivey A, Gow NA, Barrell B, Sullivan DJ, Berriman M Genome Res. 2009;. PMID: 19745113 DOI: 10.1101/gr.097501.109 |
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| Distribution of tetracycline and erythromycin resistance genes among human oral and fecal metagenomic DNA. Seville LA, Patterson AJ, Scott KP, Mullany P, Quail MA, Parkhill J, Ready D, Wilson M, Spratt D, Roberts AP Microb Drug Resist. 2009;15;159-66. PMID: 19728772 DOI: 10.1089/mdr.2009.0916 |
| SnoopCGH: software for visualizing comparative genomic hybridization data. Almagro-Garcia J, Manske M, Carret C, Campino S, Auburn S, Macinnis BL, Maslen G, Pain A, Newbold CI, Kwiatkowski DP, Clark TG Bioinformatics. 2009;25;2732-3. PMID: 19687029 DOI: 10.1093/bioinformatics/btp488 |
| From small reads do mighty genomes grow. Croucher NJ Nat Rev Microbiol. 2009;7;621. PMID: 19680245 DOI: 10.1038/nrmicro2211 |
| Trypanosomatid genomes contain several subfamilies of ingi-related retroposons. Bringaud F, Berriman M, Hertz-Fowler C Eukaryot Cell. 2009;8;1532-42. PMID: 19666780 DOI: 10.1128/EC.00183-09 |
| A strand-specific RNA-Seq analysis of the transcriptome of the typhoid bacillus Salmonella typhi. Perkins TT, Kingsley RA, Fookes MC, Gardner PP, James KD, Yu L, Assefa SA, He M, Croucher NJ, Pickard DJ, Maskell DJ, Parkhill J, Choudhary J, Thomson NR, Dougan G PLoS Genet. 2009;5;e1000569. PMID: 19609351 DOI: 10.1371/journal.pgen.1000569 |
| The genome of the blood fluke Schistosoma mansoni. Berriman M, Haas BJ, LoVerde PT, Wilson RA, Dillon GP, Cerqueira GC, Mashiyama ST, Al-Lazikani B, Andrade LF, Ashton PD, Aslett MA, Bartholomeu DC, Blandin G, Caffrey CR, Coghlan A, Coulson R, Day TA, Delcher A, DeMarco R, Djikeng A, Eyre T, Gamble JA, Ghedin E, Gu Y, Hertz-Fowler C, Hirai H, Hirai Y, Houston R, Ivens A, Johnston DA, Lacerda D, Macedo CD, McVeigh P, Ning Z, Oliveira G, Overington JP, Parkhill J, Pertea M, Pierce RJ, Protasio AV, Quail MA, Rajandream MA, Rogers J, Sajid M, Salzberg SL, Stanke M, Tivey AR, White O, Williams DL, Wortman J, Wu W, Zamanian M, Zerlotini A, Fraser-Liggett CM, Barrell BG, El-Sayed NM Nature. 2009;460;352-8. PMID: 19606141 DOI: 10.1038/nature08160 |
| Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis. Holden MT, Hauser H, Sanders M, Ngo TH, Cherevach I, Cronin A, Goodhead I, Mungall K, Quail MA, Price C, Rabbinowitsch E, Sharp S, Croucher NJ, Chieu TB, Mai NT, Diep TS, Chinh NT, Kehoe M, Leigh JA, Ward PN, Dowson CG, Whatmore AM, Chanter N, Iversen P, Gottschalk M, Slater JD, Smith HE, Spratt BG, Xu J, Ye C, Bentley S, Barrell BG, Schultsz C, Maskell DJ, Parkhill J PLoS One. 2009;4;e6072. PMID: 19603075 DOI: 10.1371/journal.pone.0006072 |
| Comparative genomics of the emerging human pathogen Photorhabdus asymbiotica with the insect pathogen Photorhabdus luminescens. Wilkinson P, Waterfield NR, Crossman L, Corton C, Sanchez-Contreras M, Vlisidou I, Barron A, Bignell A, Clark L, Doggett J, Ormond D, Mayho M, Bason N, Smith F, Simmonds M, Arrowsmith C, Churcher C, Harris D, Thompson NR, Quail M, Parkhill J, Ffrench-Constant RH BMC Genomics. 2009;10;302. PMID: 19583835 DOI: 10.1186/1471-2164-10-302 |
| Antibiotic treatment of Clostridium difficile carrier mice triggers a supershedder state, spore-mediated transmission, and severe disease in immunocompromised hosts. Lawley TD, Clare S, Walker AW, Goulding D, Stabler RA, Croucher N, Mastroeni P, Scott P, Raisen C, Mottram L, Fairweather NF, Wren BW, Parkhill J, Dougan G Infect Immun. 2009;. PMID: 19564382 DOI: 10.1128/IAI.00558-09 |
| Analysis of expressed sequence tags from the four main developmental stages of Trypanosoma congolense. Helm JR, Hertz-Fowler C, Aslett M, Berriman M, Sanders M, Quail MA, Soares MB, Bonaldo MF, Sakurai T, Inoue N, Donelson JE Mol Biochem Parasitol. 2009;. PMID: 19559733 DOI: 10.1016/j.molbiopara.2009.06.004 |
| Proteomic and genomic characterization of highly infectious Clostridium difficile 630 spores. Lawley TD, Croucher NJ, Yu L, Clare S, Sebaihia M, Goulding D, Pickard DJ, Parkhill J, Choudhary J, Dougan G J Bacteriol. 2009;. PMID: 19542279 DOI: 10.1128/JB.00597-09 |
| Milk and two oligosaccharides. Walker A Nat Rev Microbiol. 2009;7;483. PMID: 19528955 DOI: 10.1038/nrmicro2169 |
| Comparative Genomic Analysis of 10 Streptococcus pneumoniae Temperate Bacteriophages. Romero P, Croucher NJ, Hiller NL, Hu FZ, Ehrlich GD, Bentley SD, García E, Mitchell TJ J Bacteriol. 2009;. PMID: 19502408 DOI: 10.1128/JB.01272-08 |
| ABACAS: Algorithm Based Automatic Contiguation of Assembled Sequences. Assefa S, Keane TM, Otto TD, Newbold C, Berriman M Bioinformatics. 2009;. PMID: 19497936 DOI: 10.1093/bioinformatics/btp347 |
| Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA. Holt KE, Teo YY, Li H, Nair S, Dougan G, Wain J, Parkhill J Bioinformatics. 2009;. PMID: 19497932 DOI: 10.1093/bioinformatics/btp344 |
| Genome flexibility in Neisseria meningitidis. Schoen C, Tettelin H, Parkhill J, Frosch M Vaccine. 2009;. PMID: 19477564 DOI: 10.1016/j.vaccine.2009.04.064 |
| Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Butler G, Rasmussen MD, Lin MF, Santos MA, Sakthikumar S, Munro CA, Rheinbay E, Grabherr M, Forche A, Reedy JL, Agrafioti I, Arnaud MB, Bates S, Brown AJ, Brunke S, Costanzo MC, Fitzpatrick DA, de Groot PW, Harris D, Hoyer LL, Hube B, Klis FM, Kodira C, Lennard N, Logue ME, Martin R, Neiman AM, Nikolaou E, Quail MA, Quinn J, Santos MC, Schmitzberger FF, Sherlock G, Shah P, Silverstein KA, Skrzypek MS, Soll D, Staggs R, Stansfield I, Stumpf MP, Sudbery PE, Srikantha T, Zeng Q, Berman J, Berriman M, Heitman J, Gow NA, Lorenz MC, Birren BW, Kellis M, Cuomo CA Nature. 2009;459;657-62. PMID: 19465905 DOI: 10.1038/nature08064 |
| Co-evolution of genomes and plasmids within Chlamydia trachomatis and the emergence in Sweden of a new variant strain. Seth-Smith HM, Harris SR, Persson K, Marsh P, Barron A, Bignell A, Bjartling C, Clark L, Cutcliffe LT, Lambden PR, Lennard N, Lockey SJ, Quail MA, Salim O, Skilton RJ, Wang Y, Holland MJ, Parkhill J, Thomson NR, Clarke IN BMC Genomics. 2009;10;239. PMID: 19460133 DOI: 10.1186/1471-2164-10-239 |
| Discovery of mating in the major African livestock pathogen Trypanosoma congolense. Morrison LJ, Tweedie A, Black A, Pinchbeck GL, Christley RM, Schoenefeld A, Hertz-Fowler C, MacLeod A, Turner CM, Tait A PLoS ONE. 2009;4;e5564. PMID: 19440370 DOI: 10.1371/journal.pone.0005564 |
| Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens. Silby MW, Cerdeño-Tárraga AM, Vernikos GS, Giddens SR, Jackson RW, Preston GM, Zhang XX, Moon CD, Gehrig SM, Godfrey SA, Knight CG, Malone JG, Robinson Z, Spiers AJ, Harris S, Challis GL, Yaxley AM, Harris D, Seeger K, Murphy L, Rutter S, Squares R, Quail MA, Saunders E, Mavromatis K, Brettin TS, Bentley SD, Hothersall J, Stephens E, Thomas CM, Parkhill J, Levy SB, Rainey PB, Thomson NR Genome Biol. 2009;10;R51. PMID: 19432983 DOI: 10.1186/gb-2009-10-5-r51 |
| Genome watch: breaking the ICE. Seth-Smith H, Croucher NJ Nat Rev Microbiol. 2009;7;328-9. PMID: 19369947 DOI: 10.1038/nrmicro2137 |
| Expression analysis of the Theileria parva subtelomere-encoded variable secreted protein gene family. Schmuckli-Maurer J, Casanova C, Schmied S, Affentranger S, Parvanova I, Kang'a S, Nene V, Katzer F, McKeever D, Müller J, Bishop R, Pain A, Dobbelaere DA PLoS ONE. 2009;4;e4839. PMID: 19325907 DOI: 10.1371/journal.pone.0004839 |
| Genomic evidence for the evolution of Streptococcus equi: host restriction, increased virulence, and genetic exchange with human pathogens. Holden MT, Heather Z, Paillot R, Steward KF, Webb K, Ainslie F, Jourdan T, Bason NC, Holroyd NE, Mungall K, Quail MA, Sanders M, Simmonds M, Willey D, Brooks K, Aanensen DM, Spratt BG, Jolley KA, Maiden MC, Kehoe M, Chanter N, Bentley SD, Robinson C, Maskell DJ, Parkhill J, Waller AS PLoS Pathog. 2009;5;e1000346. PMID: 19325880 DOI: 10.1371/journal.ppat.1000346 |
| A comprehensive survey of single nucleotide polymorphisms (SNPs) across Mycobacterium bovis strains and M. bovis BCG vaccine strains refines the genealogy and defines a minimal set of SNPs that separate virulent M. bovis strains and M. bovis BCG strains. Garcia Pelayo MC, Uplekar S, Keniry A, Mendoza Lopez P, Garnier T, Nunez Garcia J, Boschiroli L, Zhou X, Parkhill J, Smith N, Hewinson RG, Cole ST, Gordon SV Infect Immun. 2009;77;2230-8. PMID: 19289514 DOI: 10.1128/IAI.01099-08 |
| Sequencing the species pan-genome. Bentley S Nat Rev Microbiol. 2009;7;258-9. PMID: 19287447 DOI: 10.1038/nrmicro2123 |
| Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes. Kozarewa I, Ning Z, Quail MA, Sanders MJ, Berriman M, Turner DJ Nat Methods. 2009;6;291-5. PMID: 19287394 DOI: 10.1038/nmeth.1311 |
| Plasmodium genomics: latest milestone. Pain A, Hertz-Fowler C Nat Rev Microbiol. 2009;7;180-181. PMID: 19219050 DOI: 10.1038/nrmicro2096 |
| The Streptococcus equi prophage-encoded protein SEQ2045 is a hyaluronan-specific hyaluronate lyase that is produced during equine infection. Lindsay AM, Zhang M, Mitchell Z, Holden MT, Waller AS, Sutcliffe IC, Black GW Microbiology. 2009;155;443-9. PMID: 19202092 DOI: 10.1099/mic.0.020826-0 |
| Evidence for niche adaptation in the genome of the bovine pathogen Streptococcus uberis. Ward PN, Holden MT, Leigh JA, Lennard N, Bignell A, Barron A, Clark L, Quail MA, Woodward J, Barrell BG, Egan SA, Field TR, Maskell D, Kehoe M, Dowson CG, Chanter N, Whatmore AM, Bentley SD, Parkhill J BMC Genomics. 2009;10;54. PMID: 19175920 DOI: 10.1186/1471-2164-10-54 |
| Pseudogene accumulation in the evolutionary histories of Salmonella enterica serovars Paratyphi A and Typhi. Holt KE, Thomson NR, Wain J, Langridge GC, Hasan R, Bhutta ZA, Quail MA, Norbertczak H, Walker D, Simmonds M, White B, Bason N, Mungall K, Dougan G, Parkhill J BMC Genomics. 2009;10;36. PMID: 19159446 DOI: 10.1186/1471-2164-10-36 |
| The Role of Conjugative Elements in the Evolution of the Multi-Drug Resistant Pandemic Clone Streptococcus pneumoniaeSpain23F ST81. Croucher NJ, Walker D, Romero P, Lennard N, Paterson GK, Bason NC, Mitchell AM, Quail MA, Andrew PW, Parkhill J, Bentley SD, Mitchell TJ J Bacteriol. 2008;. PMID: 19114491 DOI: 10.1128/JB.01343-08 |
| The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay. Hjerde E, Lorentzen MS, Holden MT, Seeger K, Paulsen S, Bason N, Churcher C, Harris D, Norbertczak H, Quail MA, Sanders S, Thurston S, Parkhill J, Willassen NP, Thomson NR BMC Genomics. 2008;9;616. PMID: 19099551 DOI: 10.1186/1471-2164-9-616 |
| Opportunity knocks. Seth-Smith H, Walker A Nat Rev Microbiol. 2008;6;652-3. PMID: 19086123 |
| In silico identification of genes in bacteriophage DNA. Kropinski AM, Borodovsky M, Carver TJ, Cerdeño-Tárraga AM, Darling A, Lomsadze A, Mahadevan P, Stothard P, Seto D, Van Domselaar G, Wishart DS Methods Mol Biol. 2009;502;57-89. PMID: 19082552 DOI: 10.1007/978-1-60327-565-1_6 |
| Insights into the genome sequence of a free-living Kinetoplastid: Bodo saltans (Kinetoplastida: Euglenozoa). Jackson AP, Quail MA, Berriman M BMC Genomics. 2008;9;594. PMID: 19068121 DOI: 10.1186/1471-2164-9-594 |
| Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa. Winstanley C, Langille MG, Fothergill JL, Kukavica-Ibrulj I, Paradis-Bleau C, Sanschagrin F, Thomson NR, Winsor GL, Quail MA, Lennard N, Bignell A, Clarke L, Seeger K, Saunders D, Harris D, Parkhill J, Hancock RE, Brinkman FS, Levesque RC Genome Res. 2009;19;12-23. PMID: 19047519 DOI: 10.1101/gr.086082.108 |
| Variation in Salmonella enterica serovar typhi IncHI1 plasmids during the global spread of resistant typhoid fever. Phan MD, Kidgell C, Nair S, Holt KE, Turner AK, Hinds J, Butcher P, Cooke FJ, Thomson NR, Titball R, Bhutta ZA, Hasan R, Dougan G, Wain J Antimicrob Agents Chemother. 2009;53;716-27. PMID: 19015365 DOI: 10.1128/AAC.00645-08 |
| Proteomes and transcriptomes of the Apicomplexa--where's the message? Wastling JM, Xia D, Sohal A, Chaussepied M, Pain A, Langsley G Int J Parasitol. 2009;39;135-43. PMID: 18996390 DOI: 10.1016/j.ijpara.2008.10.003 |
| DNAPlotter: circular and linear interactive genome visualization. Carver T, Thomson N, Bleasby A, Berriman M, Parkhill J Bioinformatics. 2009;25;119-20. PMID: 18990721 DOI: 10.1093/bioinformatics/btn578 |
| A novel streptococcal integrative conjugative element involved in iron acquisition. Heather Z, Holden MT, Steward KF, Parkhill J, Song L, Challis GL, Robinson C, Davis-Poynter N, Waller AS Mol Microbiol. 2008;70;1274-92. PMID: 18990191 DOI: 10.1111/j.1365-2958.2008.06481.x |
| Telomeric expression sites are highly conserved in Trypanosoma brucei. Hertz-Fowler C, Figueiredo LM, Quail MA, Becker M, Jackson A, Bason N, Brooks K, Churcher C, Fahkro S, Goodhead I, Heath P, Kartvelishvili M, Mungall K, Harris D, Hauser H, Sanders M, Saunders D, Seeger K, Sharp S, Taylor JE, Walker D, White B, Young R, Cross GA, Rudenko G, Barry JD, Louis EJ, Berriman M PLoS ONE. 2008;3;e3527. PMID: 18953401 DOI: 10.1371/journal.pone.0003527 |
| Sequence and analysis of a plasmid-encoded mercury resistance operon from Mycobacterium marinum identifies MerH, a new mercuric ion transporter. Schué M, Dover LG, Besra GS, Parkhill J, Brown NL J Bacteriol. 2009;191;439-44. PMID: 18931130 DOI: 10.1128/JB.01063-08 |
| The genome of Burkholderia cenocepacia J2315, an epidemic pathogen of cystic fibrosis patients. Holden MT, Seth-Smith HM, Crossman LC, Sebaihia M, Bentley SD, Cerdeño-Tárraga AM, Thomson NR, Bason N, Quail MA, Sharp S, Cherevach I, Churcher C, Goodhead I, Hauser H, Holroyd N, Mungall K, Scott P, Walker D, White B, Rose H, Iversen P, Mil-Homens D, Rocha EP, Fialho AM, Baldwin A, Dowson C, Barrell BG, Govan JR, Vandamme P, Hart CA, Mahenthiralingam E, Parkhill J J Bacteriol. 2009;191;261-77. PMID: 18931103 DOI: 10.1128/JB.01230-08 |
| Genomic-scale prioritization of drug targets: the TDR Targets database. Agüero F, Al-Lazikani B, Aslett M, Berriman M, Buckner FS, Campbell RK, Carmona S, Carruthers IM, Chan AW, Chen F, Crowther GJ, Doyle MA, Hertz-Fowler C, Hopkins AL, McAllister G, Nwaka S, Overington JP, Pain A, Paolini GV, Pieper U, Ralph SA, Riechers A, Roos DS, Sali A, Shanmugam D, Suzuki T, Van Voorhis WC, Verlinde CL Nat Rev Drug Discov. 2008;7;900-7. PMID: 18927591 DOI: 10.1038/nrd2684 |
| Sequence data swell for nematodes. Hertz-Fowler C, Pain A Nat Rev Microbiol. 2008;6;800-1. PMID: 18923407 DOI: 10.1038/nrmicro2021 |
| Genetics of mating and sex determination in the parasitic nematode Haemonchus contortus. Redman E, Grillo V, Saunders G, Packard E, Jackson F, Berriman M, Gilleard JS Genetics. 2008;180;1877-87. PMID: 18854587 DOI: 10.1534/genetics.108.094623 |
| Genome watch: crops and robbers. Petty NK Nat Rev Microbiol. 2008;6;716-7. PMID: 18850000 DOI: 10.1038/nrmicro2005 |
| Opportunity knocks. Seth-Smith H, Walker A Nat Rev Microbiol. 2008;6;652-653. PMID: 18849999 DOI: 10.1038/nrmicro1985 |
| Characterisation of the genomes of a diverse collection of Salmonella enterica serovar Typhimurium definitive phage type 104 (DT104). Cooke FJ, Brown DJ, Fookes M, Pickard D, Ivens A, Wain J, Roberts M, Kingsley RA, Thomson NR, Dougan G J Bacteriol. 2008;. PMID: 18849424 DOI: 10.1128/JB.00636-08 |
| Artemis and ACT: Viewing, annotating and comparing sequences stored in a relational database. Carver T, Berriman M, Tivey A, Patel C, Böhme U, Barrell BG, Parkhill J, Rajandream MA Bioinformatics. 2008;. PMID: 18845581 DOI: 10.1093/bioinformatics/btn529 |
| The genome of the simian and human malaria parasite Plasmodium knowlesi. Pain A, Böhme U, Berry AE, Mungall K, Finn RD, Jackson AP, Mourier T, Mistry J, Pasini EM, Aslett MA, Balasubrammaniam S, Borgwardt K, Brooks K, Carret C, Carver TJ, Cherevach I, Chillingworth T, Clark TG, Galinski MR, Hall N, Harper D, Harris D, Hauser H, Ivens A, Janssen CS, Keane T, Larke N, Lapp S, Marti M, Moule S, Meyer IM, Ormond D, Peters N, Sanders M, Sanders S, Sargeant TJ, Simmonds M, Smith F, Squares R, Thurston S, Tivey AR, Walker D, White B, Zuiderwijk E, Churcher C, Quail MA, Cowman AF, Turner CM, Rajandream MA, Kocken CH, Thomas AW, Newbold CI, Barrell BG, Berriman M Nature. 2008;455;799-803. PMID: 18843368 DOI: 10.1038/nature07306 |
| Rapid Virulence Annotation (RVA): Identification of virulence factors using a bacterial genome library and multiple invertebrate hosts. Waterfield NR, Sanchez-Contreras M, Eleftherianos I, Dowling A, Wilkinson P, Parkhill J, Thomson N, Reynolds SE, Bode HB, Dorus S, Ffrench-Constant RH Proc Natl Acad Sci U S A. 2008;. PMID: 18838673 DOI: 10.1073/pnas.0711114105 |
| Time to remove the model organism blinkers. Parkhill J Trends Microbiol. 2008;. PMID: 18829323 DOI: 10.1016/j.tim.2008.08.003 |
| The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae. Gross R, Guzman CA, Sebaihia M, Martins Dos Santos VA, Pieper DH, Koebnik R, Lechner M, Bartels D, Buhrmester J, Choudhuri JV, Ebensen T, Gaigalat L, Herrmann S, Khachane AN, Larisch C, Link S, Linke B, Meyer F, Mormann S, Nakunst D, Rueckert C, Schneiker-Bekel S, Schulze K, Vorhoelter FJ, Yevsa T, Engle JT, Goldman WE, Puehler A, Goebel UB, Goesmann A, Bloecker H, Kaiser O, Martinez-Arias R BMC Genomics. 2008;9;449. PMID: 18826580 DOI: 10.1186/1471-2164-9-449 |
| Population genomics: modeling the new and a renaissance of the old. Brinkman FS, Parkhill J Curr Opin Microbiol. 2008;. PMID: 18824130 DOI: 10.1016/j.mib.2008.09.001 |
| Gene expression changes linked to antimicrobial resistance, oxidative stress, iron depletion and retained motility are observed when Burkholderia cenocepacia grows in cystic fibrosis sputum. Drevinek P, Holden MT, Ge Z, Jones AM, Ketchell I, Gill RT, Mahenthiralingam E BMC Infect Dis. 2008;8;121. PMID: 18801206 DOI: 10.1186/1471-2334-8-121 |
| The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates. Rasko DA, Rosovitz MJ, Myers GS, Mongodin EF, Fricke WF, Gajer P, Crabtree J, Sebaihia M, Thomson NR, Chaudhuri R, Henderson IR, Sperandio V, Ravel J J Bacteriol. 2008;190;6881-93. PMID: 18676672 DOI: 10.1128/JB.00619-08 |
| High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi. Holt KE, Parkhill J, Mazzoni CJ, Roumagnac P, Weill FX, Goodhead I, Rance R, Baker S, Maskell DJ, Wain J, Dolecek C, Achtman M, Dougan G Nat Genet. 2008;40;987-93. PMID: 18660809 DOI: 10.1038/ng.195 |
| eGenomics: Cataloguing our Complete Genome Collection. Field D, Garrity G, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N Comp Funct Genomics. 2005;6;363-8. PMID: 18629208 DOI: 10.1002/cfg.494 |
| A re-annotation of the Saccharomyces cerevisiae genome. Wood V, Rutherford KM, Ivens A, Rajandream MA, Barrell B Comp Funct Genomics. 2001;2;143-54. PMID: 18628908 DOI: 10.1002/cfg.86 |
| Genomic adaptation: a fungal perspective. Pain A, Hertz-Fowler C Nat Rev Microbiol. 2008;6;572-3. PMID: 18628767 DOI: 10.1038/nrmicro1964 |
| Evolution of the Rhodococcus equi vap pathogenicity island seen through comparison of host associated vapA and vapB virulence plasmids. Letek M, Ocampo-Sosa A, Sanders M, Fogarty U, Buckley T, Leadon D, González P, Scortti M, Meijer WG, Parkhill J, Bentley S, Vázquez-Boland JA J Bacteriol. 2008;. PMID: 18606735 DOI: 10.1128/JB.00468-08 |
| A common genomic framework for a diverse assembly of plasmids in the symbiotic nitrogen fixing bacteria. Crossman LC, Castillo-Ramírez S, McAnnula C, Lozano L, Vernikos GS, Acosta JL, Ghazoui ZF, Hernández-González I, Meakin G, Walker AW, Hynes MF, Young JP, Downie JA, Romero D, Johnston AW, Dávila G, Parkhill J, González V PLoS ONE. 2008;3;e2567. PMID: 18596979 DOI: 10.1371/journal.pone.0002567 |
| Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287/91 provides insights into evolutionary and host adaptation pathways. Thomson NR, Clayton DJ, Windhorst D, Vernikos G, Davidson S, Churcher C, Quail MA, Stevens M, Jones MA, Watson M, Barron A, Layton A, Pickard D, Kingsley RA, Bignell A, Clark L, Harris B, Ormond D, Abdellah Z, Brooks K, Cherevach I, Chillingworth T, Woodward J, Norberczak H, Lord A, Arrowsmith C, Jagels K, Moule S, Mungall K, Saunders M, Whitehead S, Chabalgoity JA, Maskell D, Humphreys T, Roberts M, Barrow PA, Dougan G, Parkhill J Genome Res. 2008;. PMID: 18583645 DOI: 10.1101/gr.077404.108 |
| Replacement of Adenylate Cyclase Toxin in a Lineage of Bordetella bronchiseptica. Buboltz AM, Nicholson TL, Parette MR, Hester SE, Parkhill J, Harvill ET J Bacteriol. 2008;. PMID: 18556799 DOI: 10.1128/JB.00226-08 |
| Genome Evolution of Wolbachia Strain wPip from the Culex pipiens Group. Klasson L, Walker T, Sebaihia M, Sanders MJ, Quail MA, Lord A, Sanders S, Earl J, O'Neill SL, Thomson N, Sinkins SP, Parkhill J Mol Biol Evol. 2008;. PMID: 18550617 DOI: 10.1093/molbev/msn133 |
| Vive la différence. Thomson NR Nat Rev Microbiol. 2008;6;502-3. PMID: 18536729 DOI: 10.1038/nrmicro1929 |
| Characterization of the antimicrobial peptide attacin loci from Glossina morsitans. Wang J, Hu C, Wu Y, Stuart A, Amemiya C, Berriman M, Toyoda A, Hattori M, Aksoy S Insect Mol Biol. 2008;17;293-302. PMID: 18477243 DOI: 10.1111/j.1365-2583.2008.00805.x |
| Microbiology in the post-genomic era. Medini D, Serruto D, Parkhill J, Relman DA, Donati C, Moxon R, Falkow S, Rappuoli R Nat Rev Microbiol. 2008;6;419-30. PMID: 18475305 DOI: 10.1038/nrmicro1901 |
| Comparative genomics of the Rab protein family in Apicomplexan parasites. Langsley G, van Noort V, Carret C, Meissner M, de Villiers EP, Bishop R, Pain A Microbes Infect. 2008;10;462-70. PMID: 18468471 DOI: 10.1016/j.micinf.2008.01.017 |
| The minimum information about a genome sequence (MIGS) specification. Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV, Ashburner M, Axelrod N, Baldauf S, Ballard S, Boore J, Cochrane G, Cole J, Dawyndt P, De Vos P, DePamphilis C, Edwards R, Faruque N, Feldman R, Gilbert J, Gilna P, Glöckner FO, Goldstein P, Guralnick R, Haft D, Hancock D, Hermjakob H, Hertz-Fowler C, Hugenholtz P, Joint I, Kagan L, Kane M, Kennedy J, Kowalchuk G, Kottmann R, Kolker E, Kravitz S, Kyrpides N, Leebens-Mack J, Lewis SE, Li K, Lister AL, Lord P, Maltsev N, Markowitz V, Martiny J, Methe B, Mizrachi I, Moxon R, Nelson K, Parkhill J, Proctor L, White O, Sansone SA, Spiers A, Stevens R, Swift P, Taylor C, Tateno Y, Tett A, Turner S, Ussery D, Vaughan B, Ward N, Whetzel T, San Gil I, Wilson G, Wipat A Nat Biotechnol. 2008;26;541-7. PMID: 18464787 DOI: 10.1038/nbt1360 |
| Burkholderia pseudomallei genome plasticity associated with genomic island variation. Tumapa S, Holden MT, Vesaratchavest M, Wuthiekanun V, Limmathurotsakul D, Chierakul W, Feil EJ, Currie BJ, Day NP, Nierman WC, Peacock SJ BMC Genomics. 2008;9;190. PMID: 18439288 DOI: 10.1186/1471-2164-9-190 |
| The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants. Crossman LC, Gould VC, Dow JM, Vernikos GS, Okazaki A, Sebaihia M, Saunders D, Arrowsmith C, Carver T, Peters N, Adlem E, Kerhornou A, Lord A, Murphy L, Seeger K, Squares R, Rutter S, Quail MA, Rajandream MA, Harris D, Churcher C, Bentley SD, Parkhill J, Thomson NR, Avison MB Genome Biol. 2008;9;R74. PMID: 18419807 DOI: 10.1186/gb-2008-9-4-r74 |
| Insights from the complete genome sequence of Mycobacterium marinum on the evolution of Mycobacterium tuberculosis. Stinear TP, Seemann T, Harrison PF, Jenkin GA, Davies JK, Johnson PD, Abdellah Z, Arrowsmith C, Chillingworth T, Churcher C, Clarke K, Cronin A, Davis P, Goodhead I, Holroyd N, Jagels K, Lord A, Moule S, Mungall K, Norbertczak H, Quail MA, Rabbinowitsch E, Walker D, White B, Whitehead S, Small PL, Brosch R, Ramakrishnan L, Fischbach MA, Parkhill J, Cole ST Genome Res. 2008;18;729-41. PMID: 18403782 DOI: 10.1101/gr.075069.107 |
| Complete genome sequence of uropathogenic Proteus mirabilis, a master of both adherence and motility. Pearson MM, Sebaihia M, Churcher C, Quail MA, Seshasayee AS, Luscombe NM, Abdellah Z, Arrosmith C, Atkin B, Chillingworth T, Hauser H, Jagels K, Moule S, Mungall K, Norbertczak H, Rabbinowitsch E, Walker D, Whithead S, Thomson NR, Rather PN, Parkhill J, Mobley HL J Bacteriol. 2008;190;4027-37. PMID: 18375554 DOI: 10.1128/JB.01981-07 |
| The neglected role of antibody in protection against bacteremia caused by nontyphoidal strains of Salmonella in African children. MacLennan CA, Gondwe EN, Msefula CL, Kingsley RA, Thomson NR, White SA, Goodall M, Pickard DJ, Graham SM, Dougan G, Hart CA, Molyneux ME, Drayson MT J Clin Invest. 2008;118;1553-62. PMID: 18357343 DOI: 10.1172/JCI33998 |
| Genomic 'valleys of death'. Bentley S Nat Rev Microbiol. 2008;6;260-1. PMID: 18340971 |
| SrfB, a member of the Serum Response Factor family of transcription factors, regulates starvation response and early development in Dictyostelium. Galardi-Castilla M, Pergolizzi B, Bloomfield G, Skelton J, Ivens A, Kay RR, Bozzaro S, Sastre L Dev Biol. 2008;. PMID: 18339368 DOI: 10.1016/j.ydbio.2008.01.026 |
| Pathogenomics: An updated European Research Agenda. Demuth A, Aharonowitz Y, Bachmann TT, Blum-Oehler G, Buchrieser C, Covacci A, Dobrindt U, Emödy L, van der Ende A, Ewbank J, Fernández LA, Frosch M, Portillo FG, Gilmore MS, Glaser P, Goebel W, Hasnain SE, Heesemann J, Islam K, Korhonen T, Maiden M, Meyer TF, Montecucco C, Oswald E, Parkhill J, Pucciarelli MG, Ron E, Svanborg C, Uhlin BE, Wai SN, Wehland J, Hacker J Infect Genet Evol. 2008;. PMID: 18321793 DOI: 10.1016/j.meegid.2008.01.005 |
| Single-cell genomics. Walker A, Parkhill J Nat Rev Microbiol. 2008;6;176-7. PMID: 18283727 |
| Different pathways to acquire resistance genes illustrated by the recent evolution of IncW plasmids. Revilla C, Garcillán-Barcia MP, Fernández-López R, Thomson NR, Sanders M, Cheung M, Thomas CM, de la Cruz F Antimicrob Agents Chemother. 2008;. PMID: 18268088 DOI: 10.1128/AAC.00982-07 |
| Genome of the actinomycete plant pathogen Clavibacter michiganensis subsp. sepedonicus suggests recent niche adaptation. Bentley SD, Corton C, Brown SE, Barron A, Clark L, Doggett J, Harris B, Ormond D, Quail MA, May G, Francis D, Knudson D, Parkhill J, Ishimaru CA J Bacteriol. 2008;190;2150-60. PMID: 18192393 DOI: 10.1128/JB.01598-07 |
| Molecular Characterisation of the Salmonella enterica serovar Typhi Vi typing bacteriophage E1. Pickard D, Thomson NR, Baker S, Wain J, Pardo M, Goulding D, Hamlin N, Choudhary J, Threfall J, Dougan G J Bacteriol. 2008;. PMID: 18192390 DOI: 10.1128/JB.01654-07 |
| Genome-wide discovery and verification of novel structured RNAs in Plasmodium falciparum. Mourier T, Carret C, Kyes S, Christodoulou Z, Gardner PP, Jeffares DC, Pinches R, Barrell B, Berriman M, Griffiths-Jones S, Ivens A, Newbold C, Pain A Genome Res. 2008;18;281-92. PMID: 18096748 DOI: 10.1101/gr.6836108 |
| Resolving the structural features of genomic islands: a machine learning approach. Vernikos GS, Parkhill J Genome Res. 2008;18;331-42. PMID: 18071028 DOI: 10.1101/gr.7004508 |
| Sequence-based analysis of pQBR103; a representative of a unique, transfer-proficient mega plasmid resident in the microbial community of sugar beet. Tett A, Spiers AJ, Crossman LC, Ager D, Ciric L, Dow JM, Fry JC, Harris D, Lilley A, Oliver A, Parkhill J, Quail MA, Rainey PB, Saunders NJ, Seeger K, Snyder LA, Squares R, Thomas CM, Turner SL, Zhang XX, Field D, Bailey MJ ISME J. 2007;1;331-40. PMID: 18043644 DOI: 10.1038/ismej.2007.47 |
| Chlamydia trachomatis: genome sequence analysis of lymphogranuloma venereum isolates. Thomson NR, Holden MT, Carder C, Lennard N, Lockey SJ, Marsh P, Skipp P, O'Connor CD, Goodhead I, Norbertzcak H, Harris B, Ormond D, Rance R, Quail MA, Parkhill J, Stephens RS, Clarke IN Genome Res. 2008;18;161-71. PMID: 18032721 DOI: 10.1101/gr.7020108 |
| Evolutionary consequences of a large duplication event in Trypanosoma brucei: chromosomes 4 and 8 are partial duplicons. Jackson AP BMC Genomics. 2007;8;432. PMID: 18036214 DOI: 10.1186/1471-2164-8-432 |
| Sequence and functional analyses of Haemophilus spp. genomic islands. Juhas M, Power PM, Harding RM, Ferguson DJ, Dimopoulou ID, Elamin AR, Mohd-Zain Z, Hood DW, Adegbola R, Erwin A, Smith A, Munson RS, Harrison A, Mansfield L, Bentley S, Crook DW Genome Biol. 2007;8;R237. PMID: 17996041 DOI: 10.1186/gb-2007-8-11-r237 |
| WebACT: an online genome comparison suite. Abbott JC, Aanensen DM, Bentley SD Methods Mol Biol. 2007;395;57-74. PMID: 17993667 |
| Patterns of evolution in the unique tRNA gene arrays of the genus Entamoeba. Tawari B, Ali IK, Scott C, Quail MA, Berriman M, Hall N, Clark CG Mol Biol Evol. 2008;25;187-98. PMID: 17974548 DOI: 10.1093/molbev/msm238 |
| Comparative genome analyses of the pathogenic Yersiniae based on the genome sequence of Yersinia enterocolitica strain 8081. Thomson NR, Howard S, Wren BW, Prentice MB Adv Exp Med Biol. 2007;603;2-16. PMID: 17966400 |
| Sink or swim. Crossman LC Nat Rev Microbiol. 2007;5;834-5. PMID: 17939228 DOI: 10.1038/nrmicro1777 |
| Ankyrin repeat domain-encoding genes in the wPip strain of Wolbachia from the Culex pipiens group. Walker T, Klasson L, Sebaihia M, Sanders MJ, Thomson NR, Parkhill J, Sinkins SP BMC Biol. 2007;5;39. PMID: 17883830 DOI: 10.1186/1741-7007-5-39 |
| Urbane decay. Walker A, Seth-Smith H Nat Rev Microbiol. 2007;5;748-9. PMID: 17867225 |
| A generalized transducing phage for the murine pathogen Citrobacter rodentium. Petty NK, Toribio AL, Goulding D, Foulds I, Thomson N, Dougan G, Salmond GP Microbiology. 2007;153;2984-8. PMID: 17768241 DOI: 10.1099/mic.0.2007/008888-0 |
| Genetic relatedness of the Streptococcus pneumoniae capsular biosynthetic loci. Mavroidi A, Aanensen DM, Godoy D, Skovsted IC, Kaltoft MS, Reeves PR, Bentley SD, Spratt BG J Bacteriol. 2007;. PMID: 17766424 DOI: 10.1128/JB.00836-07 |
| Predicted functions and linkage specificities of the products of the Streptococcus pneumoniae capsular biosynthetic loci. Aanensen DM, Mavroidi A, Bentley SD, Reeves PR, Spratt BG J Bacteriol. 2007;. PMID: 17766420 DOI: 10.1128/JB.00837-07 |
| Salmonella enterica Serovar Typhimurium Exploits Inflammation to Compete with the Intestinal Microbiota. Stecher B, Robbiani R, Walker AW, Westendorf AM, Barthel M, Kremer M, Chaffron S, Macpherson AJ, Buer J, Parkhill J, Dougan G, von Mering C, Hardt WD PLoS Biol. 2007;5;e244. PMID: 17760501 DOI: 10.1371/journal.pbio.0050244 |
| Extensive chromosome rearrangements distinguish the karyotype of the hypovirulent species Candida dubliniensis from the virulent Candida albicans. Magee BB, Sanchez MD, Saunders D, Harris D, Berriman M, Magee PT Fungal Genet Biol. 2007;. PMID: 17719250 DOI: 10.1016/j.fgb.2007.07.004 |
| Variety is the spice of eukaryotic life. Berriman M, Pain A Nat Rev Microbiol. 2007;5;660-1. PMID: 17703542 |
| Epigenetic silencing of Plasmodium falciparum genes linked to erythrocyte invasion. Cortés A, Carret C, Kaneko O, Yim Lim BY, Ivens A, Holder AA PLoS Pathog. 2007;3;e107. PMID: 17676953 DOI: 10.1371/journal.ppat.0030107 |
| Comparative Genomic Analyses of Seventeen Streptococcus pneumoniae Strains: Insights into the Pneumococcal Supragenome. Hiller NL, Janto B, Hogg JS, Boissy R, Yu S, Powell E, Keefe R, Ehrlich NE, Shen K, Hayes J, Barbadora K, Klimke W, Dernovoy D, Tatusova T, Parkhill J, Bentley SD, Post JC, Ehrlich GD, Hu FZ J Bacteriol. 2007;. PMID: 17675389 DOI: 10.1128/JB.00690-07 |
| Advances in the genomics of ticks and tick-borne pathogens. Jongejan F, Nene V, de la Fuente J, Pain A, Willadsen P Trends Parasitol. 2007;23;391-6. PMID: 17656151 DOI: 10.1016/j.pt.2007.07.004 |
| Comparative genomics: from genotype to disease phenotype in the leishmaniases. Smith DF, Peacock CS, Cruz AK Int J Parasitol. 2007;37;1173-86. PMID: 17645880 DOI: 10.1016/j.ijpara.2007.05.015 |
| Differential var gene expression in the organs of patients dying of falciparum malaria. Montgomery J, Mphande FA, Berriman M, Pain A, Rogerson SJ, Taylor TE, Molyneux ME, Craig A Mol Microbiol. 2007;65;959-67. PMID: 17617167 DOI: 10.1111/j.1365-2958.2007.05837.x |
| The practical implications of comparative kinetoplastid genomics. Peacock CS SEB Exp Biol Ser. 2007;58;25-45. PMID: 17608236 |
| Comparative genomic analysis of three Leishmania species that cause diverse human disease. Peacock CS, Seeger K, Harris D, Murphy L, Ruiz JC, Quail MA, Peters N, Adlem E, Tivey A, Aslett M, Kerhornou A, Ivens A, Fraser A, Rajandream MA, Carver T, Norbertczak H, Chillingworth T, Hance Z, Jagels K, Moule S, Ormond D, Rutter S, Squares R, Whitehead S, Rabbinowitsch E, Arrowsmith C, White B, Thurston S, Bringaud F, Baldauf SL, Faulconbridge A, Jeffares D, Depledge DP, Oyola SO, Hilley JD, Brito LO, Tosi LR, Barrell B, Cruz AK, Mottram JC, Smith DF, Berriman M Nat Genet. 2007;. PMID: 17572675 DOI: 10.1038/ng2053 |
| Re-annotation and re-analysis of the Campylobacter jejuni NCTC11168 genome sequence. Gundogdu O, Bentley SD, Holden MT, Parkhill J, Dorrell N, Wren BW BMC Genomics. 2007;8;162. PMID: 17565669 DOI: 10.1186/1471-2164-8-162 |
| Genetic flux over time in the Salmonella lineage. Vernikos GS, Thomson NR, Parkhill J Genome Biol. 2007;8;R100. PMID: 17547764 DOI: 10.1186/gb-2007-8-6-r100 |
| Prophage sequences defining hotspots of genome variation in Salmonella enterica serovar Typhimurium can be used to discriminate between field isolates. Cooke FJ, Wain J, Fookes M, Ivens A, Thomson N, Brown DJ, Threlfall EJ, Gunn G, Foster G, Dougan G J Clin Microbiol. 2007;. PMID: 17522270 DOI: 10.1128/JCM.00729-07 |
| Genome sequence of a proteolytic (Group I) Clostridium botulinum strain Hall A and comparative analysis of the clostridial genomes. Sebaihia M, Peck MW, Minton NP, Thomson NR, Holden MT, Mitchell WJ, Carter AT, Bentley SD, Mason DR, Crossman L, Paul CJ, Ivens A, Wells-Bennik MH, Davis IJ, Cerdeño-Tárraga AM, Churcher C, Quail MA, Chillingworth T, Feltwell T, Fraser A, Goodhead I, Hance Z, Jagels K, Larke N, Maddison M, Moule S, Mungall K, Norbertczak H, Rabbinowitsch E, Sanders M, Simmonds M, White B, Whithead S, Parkhill J Genome Res. 2007;. PMID: 17519437 DOI: 10.1101/gr.6282807 |
| It's hip to be square! Crossman LC, Walker A Nat Rev Microbiol. 2007;5;400-1. PMID: 17508437 |
| A novel linear plasmid mediates flagellar variation in Salmonella Typhi. Baker S, Hardy J, Sanderson KE, Quail M, Goodhead I, Kingsley RA, Parkhill J, Stocker B, Dougan G PLoS Pathog. 2007;3;e59. PMID: 17500588 DOI: 10.1371/journal.ppat.0030059 |
| Specialist fungi, versatile genomes. Hertz-Fowler C, Pain A Nat Rev Microbiol. 2007;5;332-3. PMID: 17436472 |
| Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes. van Het Hoog M, Rast TJ, Martchenko M, Grindle S, Dignard D, Hogues H, Cuomo C, Berriman M, Scherer S, Magee BB, Whiteway M, Chibana H, Nantel A, Magee PT Genome Biol. 2007;8;R52. PMID: 17419877 DOI: 10.1186/gb-2007-8-4-r52 |
| Altered phenotype and gene transcription in endothelial cells, induced by Plasmodium falciparum-infected red blood cells: Pathogenic or protective? Chakravorty SJ, Carret C, Nash GB, Ivens A, Szestak T, Craig AG Int J Parasitol. 2007;37;975-87. PMID: 17383656 DOI: 10.1016/j.ijpara.2007.02.006 |
| Multidrug-resistant Salmonella enterica serovar Paratyphi A harbour IncHI1 plasmids similar to those found in serovar Typhi. Holt KE, Thomson NR, Wain J, Phan MD, Nair S, Hasan R, Bhutta ZA, Quail MA, Norbertczak H, Walker D, Dougan G, Parkhill J J Bacteriol. 2007;. PMID: 17384186 DOI: 10.1128/JB.00232-07 |
| A more convenient truth. Seth-Smith H Nat Rev Microbiol. 2007;5;248-50. PMID: 17366694 |
| Burkholderia Hep_Hap autotransporter (BuHA) proteins elicit a strong antibody response during experimental glanders but not human melioidosis. Tiyawisutsri R, Holden MT, Tumapa S, Rengpipat S, Clarke SR, Foster SJ, Nierman WC, Day NP, Peacock SJ BMC Microbiol. 2007;7;19. PMID: 17362501 DOI: 10.1186/1471-2180-7-19 |
| CORRIGENDUM: Genome variation and evolution of the malaria parasite Plasmodium falciparum. Jeffares DC, Pain A, Berry A, Cox AV, Stalker J, Ingle CE, Thomas A, Quail MA, Siebenthall K, Uhlemann AC, Kyes S, Krishna S, Newbold C, Dermitzakis ET, Berriman M Nat Genet. 2007;39;422. PMID: 17325682 DOI: 10.1038/ng0307-422 |
| Genome plasticity of BCG and impact on vaccine efficacy. Brosch R, Gordon SV, Garnier T, Eiglmeier K, Frigui W, Valenti P, Dos Santos S, Duthoy S, Lacroix C, Garcia-Pelayo C, Inwald JK, Golby P, Garcia JN, Hewinson RG, Behr MA, Quail MA, Churcher C, Barrell BG, Parkhill J, Cole ST Proc Natl Acad Sci U S A. 2007;104;5596-601. PMID: 17372194 DOI: 10.1073/pnas.0700869104 |
| Bacterial therapeutics. Bentley S, Sebaihia M Nat Rev Microbiol. 2007;5;170-1. PMID: 17310535 |
| Meningococcal Genetic Variation Mechanisms Viewed through Comparative Analysis of Serogroup C Strain FAM18. Bentley SD, Vernikos GS, Snyder LA, Churcher C, Arrowsmith C, Chillingworth T, Cronin A, Davis PH, Holroyd NE, Jagels K, Maddison M, Moule S, Rabbinowitsch E, Sharp S, Unwin L, Whitehead S, Quail MA, Achtman M, Barrell B, Saunders NJ, Parkhill J PLoS Genet. 2007;3;e23. PMID: 17305430 DOI: 10.1371/journal.pgen.0030023 |
| Sequencing and analysis of chromosome 1 of Eimeria tenella reveals a unique segmental organization. Ling KH, Rajandream MA, Rivailler P, Ivens A, Yap SJ, Madeira AM, Mungall K, Billington K, Yee WY, Bankier AT, Carroll F, Durham AM, Peters N, Loo SS, Mat Isa MN, Novaes J, Quail M, Rosli R, Nor Shamsudin M, Sobreira TJ, Tivey AR, Wai SF, White S, Wu X, Kerhornou A, Blake D, Mohamed R, Shirley M, Gruber A, Berriman M, Tomley F, Dear PH, Wan KL Genome Res. 2007;. PMID: 17284678 DOI: 10.1101/gr.5823007 |
| A new environmentally resistant cell type from Dictyostelium. Serafimidis I, Bloomfield G, Skelton J, Ivens A, Kay RR Microbiology. 2007;153;619-30. PMID: 17259634 DOI: 10.1099/mic.0.2006/000562-0 |
| This place is big enough for both of us. Walker A, Crossman LC Nat Rev Microbiol. 2007;5;90-2. PMID: 17225354 |
| An H-NS-like stealth protein aids horizontal DNA transmission in bacteria. Doyle M, Fookes M, Ivens A, Mangan MW, Wain J, Dorman CJ Science. 2007;315;251-2. PMID: 17218529 DOI: 10.1126/science.1137550 |
| Reductive evolution and niche adaptation inferred from the genome of Mycobacterium ulcerans, the causative agent of Buruli ulcer. Stinear TP, Seemann T, Pidot S, Frigui W, Reysset G, Garnier T, Meurice G, Simon D, Bouchier C, Ma L, Tichit M, Porter JL, Ryan J, Johnson PD, Davies JK, Jenkin GA, Small PL, Jones LM, Tekaia F, Laval F, Daffé M, Parkhill J, Cole ST Genome Res. 2007;17;192-200. PMID: 17210928 DOI: 10.1101/gr.5942807 |
| RNA interference in parasitic helminths: current situation, potential pitfalls and future prospects. Geldhof P, Visser A, Clark D, Saunders G, Britton C, Gilleard J, Berriman M, Knox D Parasitology. 2007;1-11. PMID: 17201997 DOI: 10.1017/S0031182006002071 |
| The Complete Genome Sequence and Comparative Genome Analysis of the High Pathogenicity Yersinia enterocolitica Strain 8081. Thomson NR, Howard S, Wren BW, Holden MT, Crossman L, Challis GL, Churcher C, Mungall K, Brooks K, Chillingworth T, Feltwell T, Abdellah Z, Hauser H, Jagels K, Maddison M, Moule S, Sanders M, Whitehead S, Quail MA, Dougan G, Parkhill J, Prentice MB PLoS Genet. 2006;2;e206. PMID: 17173484 DOI: 10.1371/journal.pgen.0020206 |
| Ocean's elevenses. Seth-Smith H Nat Rev Microbiol. 2007;5;9. PMID: 17171852 |
| Genome variation and evolution of the malaria parasite Plasmodium falciparum. Jeffares DC, Pain A, Berry A, Cox AV, Stalker J, Ingle CE, Thomas A, Quail MA, Siebenthall K, Uhlemann AC, Kyes S, Krishna S, Newbold C, Dermitzakis ET, Berriman M Nat Genet. 2007;39;120-5. PMID: 17159978 DOI: 10.1038/ng1931 |
| Functional Characterization of the Plasmodium falciparum and P. berghei Homologues of Macrophage Migration Inhibitory Factor. Augustijn KD, Kleemann R, Thompson J, Kooistra T, Crawford CE, Reece SE, Pain A, Siebum AH, Janse CJ, Waters AP Infect Immun. 2007;75;1116-28. PMID: 17158894 DOI: 10.1128/IAI.00902-06 |
| Colonic irritation. Sebaihia M, Thomson NR Nat Rev Microbiol. 2006;4;882-3. PMID: 17120341 |
| 'Oming in on schistosomes: prospects and limitations for post-genomics. Wilson RA, Ashton PD, Braschi S, Dillon GP, Berriman M, Ivens A Trends Parasitol. 2007;23;14-20. PMID: 17097923 DOI: 10.1016/j.pt.2006.10.002 |
| A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes: convergence or divergence by homologous recombination? Didelot X, Achtman M, Parkhill J, Thomson NR, Falush D Genome Res. 2007;17;61-8. PMID: 17090663 DOI: 10.1101/gr.5512906 |
| Gene Ontology annotation status of the fission yeast genome: preliminary coverage approaches 100%. Aslett M, Wood V Yeast. 2006;23;913-9. PMID: 17072883 DOI: 10.1002/yea.1420 |
| Evolution of tubulin gene arrays in Trypanosomatid parasites: genomic restructuring in Leishmania. Jackson AP, Vaughan S, Gull K BMC Genomics. 2006;7;261. PMID: 17044946 DOI: 10.1186/1471-2164-7-261 |
| The grapes of wrath. Holden M, Lindsay J, Bentley S Nat Rev Microbiol. 2006;4;806-7. PMID: 17042109 |
| Phylogenetic Relationships of the Wolbachia of Nematodes and Arthropods. Fenn K, Conlon C, Jones M, Quail MA, Holroyd NE, Parkhill J, Blaxter M PLoS Pathog. 2006;2;. PMID: 17040125 |
| The complete genome of an acute rheumatic fever (ARF) associated serotype M5 Streptococcus pyogenes strain Manfredo. Holden MT, Scott A, Cherevach I, Chillingworth T, Churcher C, Cronin A, Dowd L, Feltwell T, Hamlin N, Holroyd S, Jagels K, Moule S, Mungall K, Quail MA, Price C, Rabbinowitsch E, Sharp S, Skelton J, Whitehead S, Barrell BG, Kehoe M, Parkhill J J Bacteriol. 2006;. PMID: 17012393 |
| Animal, vegetable or mineral? Cerdeño-Tárraga AM, Bentley S Nat Rev Microbiol. 2006;4;725-6. PMID: 16983803 |
| Proteomic and microarray characterization of the AggR regulon identifies a pheU pathogenicity island in enteroaggregative Escherichia coli. Dudley EG, Thomson NR, Parkhill J, Morin NP, Nataro JP Mol Microbiol. 2006;61;1267-82. PMID: 16925558 |
| Where there's muck there's microbes. Seth-Smith H, Bentley S Nat Rev Microbiol. 2006;4;646-7. PMID: 16913069 |
| Common inheritance of chromosome Ia associated with clonal expansion of Toxoplasma gondii. Khan A, Böhme U, Kelly KA, Adlem E, Brooks K, Simmonds M, Mungall K, Quail MA, Arrowsmith C, Chillingworth T, Churcher C, Harris D, Collins M, Fosker N, Fraser A, Hance Z, Jagels K, Moule S, Murphy L, O'neil S, Rajandream MA, Saunders D, Seeger K, Whitehead S, Mayr T, Xuan X, Watanabe J, Suzuki Y, Wakaguri H, Sugano S, Sugimoto C, Paulsen I, Mackey AJ, Roos DS, Hall N, Berriman M, Barrell B, Sibley LD, Ajioka JW Genome Res. 2006;16;1119-25. PMID: 16902086 |
| Faecal matters. Walker A, Cerdeño-Tárraga A, Bentley S Nat Rev Microbiol. 2006;4;572-3. PMID: 16888877 |
| Analysis of ESTs from Lutzomyia longipalpis sand flies and their contribution toward understanding the insect-parasite relationship. Dillon RJ, Ivens AC, Churcher C, Holroyd N, Quail MA, Rogers ME, Soares MB, Bonaldo MF, Casavant TL, Lehane MJ, Bates PA Genomics. 2006;88;831-40. PMID: 16887324 DOI: 10.1016/j.ygeno.2006.06.011 |
| Comparison of the genome sequence of the poultry pathogen Bordetella avium with those of B. bronchiseptica, B. pertussis, and B. parapertussis reveals extensive diversity in surface structures associated with host interaction. Sebaihia M, Preston A, Maskell DJ, Kuzmiak H, Connell TD, King ND, Orndorff PE, Miyamoto DM, Thomson NR, Harris D, Goble A, Lord A, Murphy L, Quail MA, Rutter S, Squares R, Squares S, Woodward J, Parkhill J, Temple LM J Bacteriol. 2006;188;6002-15. PMID: 16885469 |
| Interpolated variable order motifs for identification of horizontally acquired DNA: revisiting the Salmonella pathogenicity islands. Vernikos GS, Parkhill J Bioinformatics. 2006;. PMID: 16837528 |
| Peddling the nitrogen cycle. Crossman L, Thomson N Nat Rev Microbiol. 2006;4;494-5. PMID: 16835960 |
| Nonrandom distribution of Burkholderia pseudomallei clones in relation to geographical location and virulence. Vesaratchavest M, Tumapa S, Day NP, Wuthiekanun V, Chierakul W, Holden MT, White NJ, Currie BJ, Spratt BG, Feil EJ, Peacock SJ J Clin Microbiol. 2006;44;2553-7. PMID: 16825379 |
| The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome. Sebaihia M, Wren BW, Mullany P, Fairweather NF, Minton N, Stabler R, Thomson NR, Roberts AP, Cerdeño-Tárraga AM, Wang H, Holden MT, Wright A, Churcher C, Quail MA, Baker S, Bason N, Brooks K, Chillingworth T, Cronin A, Davis P, Dowd L, Fraser A, Feltwell T, Hance Z, Holroyd S, Jagels K, Moule S, Mungall K, Price C, Rabbinowitsch E, Sharp S, Simmonds M, Stevens K, Unwin L, Whithead S, Dupuy B, Dougan G, Barrell B, Parkhill J Nat Genet. 2006;38;779-86. PMID: 16804543 |
| Just one cross appears capable of dramatically altering the population biology of a eukaryotic pathogen like Toxoplasma gondii. Boyle JP, Rajasekar B, Saeij JP, Ajioka JW, Berriman M, Paulsen I, Roos DS, Sibley LD, White MW, Boothroyd JC Proc Natl Acad Sci U S A. 2006;103;10514-9. PMID: 16801557 |
| Comparative genomics and concerted evolution of beta-tubulin paralogs in Leishmania spp. Jackson AP, Vaughan S, Gull K BMC Genomics. 2006;7;137. PMID: 16756660 |
| Budget genome. Crossman L Nat Rev Microbiol. 2006;4;326-7. PMID: 16722005 |
| The genome of Rhizobium leguminosarum has recognizable core and accessory components. Young JP, Crossman LC, Johnston AW, Thomson NR, Ghazoui ZF, Hull KH, Wexler M, Curson AR, Todd JD, Poole PS, Mauchline TH, East AK, Quail MA, Churcher C, Arrowsmith C, Cherevach I, Chillingworth T, Clarke K, Cronin A, Davis P, Fraser A, Hance Z, Hauser H, Jagels K, Moule S, Mungall K, Norbertczak H, Rabbinowitsch E, Sanders M, Simmonds M, Whitehead S, Parkhill J Genome Biol. 2006;7;R34. PMID: 16640791 |
| From the Cover: Multireplicon genome architecture of Lactobacillus salivarius. Claesson MJ, Li Y, Leahy S, Canchaya C, van Pijkeren JP, Cerdeño-Tárraga AM, Parkhill J, Flynn S, O'sullivan GC, Collins JK, Higgins D, Shanahan F, Fitzgerald GF, van Sinderen D, O'toole PW Proc Natl Acad Sci U S A. 2006;103;6718-23. PMID: 16617113 |
| Cell-cell signaling in Xanthomonas campestris involves an HD-GYP domain protein that functions in cyclic di-GMP turnover. Ryan RP, Fouhy Y, Lucey JF, Crossman LC, Spiro S, He YW, Zhang LH, Heeb S, Cámara M, Williams P, Dow JM Proc Natl Acad Sci U S A. 2006;103;6712-7. PMID: 16611728 |
| Hot and sexy moulds! Pain A, Böhme U, Berriman M Nat Rev Microbiol. 2006;4;244-5. PMID: 16602146 |
| Functional analysis of luxS in Staphylococcus aureus reveals a role in metabolism but not quorum sensing. Doherty N, Holden MT, Qazi SN, Williams P, Winzer K J Bacteriol. 2006;188;2885-97. PMID: 16585750 |
| Genetic Analysis of the Capsular Biosynthetic Locus from All 90 Pneumococcal Serotypes. Bentley SD, Aanensen DM, Mavroidi A, Saunders D, Rabbinowitsch E, Collins M, Donohoe K, Harris D, Murphy L, Quail MA, Samuel G, Skovsted IC, Kaltoft MS, Barrell B, Reeves PR, Parkhill J, Spratt BG PLoS Genet. 2006;2;e31. PMID: 16532061 |
| Expressed sequence tag (EST) analysis of the erythrocytic stages of Babesia bovis. de Vries E, Corton C, Harris B, Cornelissen AW, Berriman M Vet Parasitol. 2006;138;61-74. PMID: 16530971 |
| Bacterial home from home. Thomson N, Crossman L, Bentley S Nat Rev Microbiol. 2006;4;168-70. PMID: 16528802 |
| Data mining parasite genomes. Berriman M Parasitology. 2004;128 Suppl;S23-31. PMID: 16454895 |
| Understanding the rise of the superbug: investigation of the evolution and genomic variation of Staphylococcus aureus. Lindsay JA, Holden MT Funct Integr Genomics. 2006;6;186-201. PMID: 16453141 |
| Genome-wide scan for loci influencing quantitative immune response traits in the Belém family study: comparison of methods and summary of results. Wheeler E, Miller EN, Peacock CS, Donaldson IJ, Shaw MA, Jamieson SE, Blackwell JM, Cordell HJ Ann Hum Genet. 2006;70;78-97. PMID: 16441259 |
| Schistosoma mansoni (Platyhelminthes, Trematoda) nuclear receptors: Sixteen new members and a novel subfamily. Wu W, Niles EG, El-Sayed N, Berriman M, Loverde PT Gene. 2006;366;303-315. PMID: 16406405 |
| From genome to vaccines for leishmaniasis: screening 100 novel vaccine candidates against murine Leishmania major infection. Stober CB, Lange UG, Roberts MT, Gilmartin B, Francis R, Almeida R, Peacock CS, McCann S, Blackwell JM Vaccine. 2006;24;2602-16. PMID: 16406227 |
| Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, Abe T, Arnaud MB, Berlyn MK, Blattner FR, Chaudhuri RR, Glasner JD, Horiuchi T, Keseler IM, Kosuge T, Mori H, Perna NT, Plunkett G, Rudd KE, Serres MH, Thomas GH, Thomson NR, Wishart D, Wanner BL Nucleic Acids Res. 2006;34;1-9. PMID: 16397293 |
| Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus. Nierman WC, Pain A, Anderson MJ, Wortman JR, Kim HS, Arroyo J, Berriman M, Abe K, Archer DB, Bermejo C, Bennett J, Bowyer P, Chen D, Collins M, Coulsen R, Davies R, Dyer PS, Farman M, Fedorova N, Fedorova N, Feldblyum TV, Fischer R, Fosker N, Fraser A, García JL, García MJ, Goble A, Goldman GH, Gomi K, Griffith-Jones S, Gwilliam R, Haas B, Haas H, Harris D, Horiuchi H, Huang J, Humphray S, Jiménez J, Keller N, Khouri H, Kitamoto K, Kobayashi T, Konzack S, Kulkarni R, Kumagai T, Lafon A, Lafton A, Latgé JP, Li W, Lord A, Lu C, Majoros WH, May GS, Miller BL, Mohamoud Y, Molina M, Monod M, Mouyna I, Mulligan S, Murphy L, O'Neil S, Paulsen I, Peñalva MA, Pertea M, Price C, Pritchard BL, Quail MA, Rabbinowitsch E, Rawlins N, Rajandream MA, Reichard U, Renauld H, Robson GD, Rodriguez de Córdoba S, Rodríguez-Peña JM, Ronning CM, Rutter S, Salzberg SL, Sanchez M, Sánchez-Ferrero JC, Saunders D, Seeger K, Squares R, Squares S, Takeuchi M, Tekaia F, Turner G, Vazquez de Aldana CR, Weidman J, White O, Woodward J, Yu JH, Fraser C, Galagan JE, Asai K, Machida M, Hall N, Barrell B, Denning DW Nature. 2005;438;1151-6. PMID: 16372009 |
| Food for thought. Holden M, Rajandream MA, Bentley S Nat Rev Microbiol. 2005;3;912-3. PMID: 16350281 |
| Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae. Galagan JE, Calvo SE, Cuomo C, Ma LJ, Wortman JR, Batzoglou S, Lee SI, Baştürkmen M, Spevak CC, Clutterbuck J, Kapitonov V, Jurka J, Scazzocchio C, Farman M, Butler J, Purcell S, Harris S, Braus GH, Draht O, Busch S, D'Enfert C, Bouchier C, Goldman GH, Bell-Pedersen D, Griffiths-Jones S, Doonan JH, Yu J, Vienken K, Pain A, Freitag M, Selker EU, Archer DB, Peñalva MA, Oakley BR, Momany M, Tanaka T, Kumagai T, Asai K, Machida M, Nierman WC, Denning DW, Caddick M, Hynes M, Paoletti M, Fischer R, Miller B, Dyer P, Sachs MS, Osmani SA, Birren BW Nature. 2005;438;1105-15. PMID: 16372000 |
| Microarray analysis identifies genes preferentially expressed in the lung schistosomulum of Schistosoma mansoni. Dillon GP, Feltwell T, Skelton JP, Ashton PD, Coulson PS, Quail MA, Nikolaidou-Katsaridou N, Wilson RA, Ivens AC Int J Parasitol. 2006;36;1-8. PMID: 16359678 DOI: 10.1016/j.ijpara.2005.10.008 |
| The genetic map and comparative analysis with the physical map of Trypanosoma brucei. MacLeod A, Tweedie A, McLellan S, Taylor S, Hall N, Berriman M, El-Sayed NM, Hope M, Turner CM, Tait A Nucleic Acids Res. 2005;33;6688-93. PMID: 16314301 |
| Plasmodium falciparum Variant Surface Antigen Expression Patterns during Malaria. Bull PC, Berriman M, Kyes S, Quail MA, Hall N, Kortok MM, Marsh K, Newbold CI PLoS Pathog. 2005;1;e26. PMID: 16304608 |
| Fungi behaving badly. Pain A Nat Rev Microbiol. 2005;3;832-3. PMID: 16273665 |
| Design, validation, and application of a seven-strain Staphylococcus aureus PCR product microarray for comparative genomics. Witney AA, Marsden GL, Holden MT, Stabler RA, Husain SE, Vass JK, Butcher PD, Hinds J, Lindsay JA Appl Environ Microbiol. 2005;71;7504-14. PMID: 16269792 |
| What the genome sequence is revealing about trypanosome antigenic variation. Barry JD, Marcello L, Morrison LJ, Read AF, Lythgoe K, Jones N, Carrington M, Blandin G, Böhme U, Caler E, Hertz-Fowler C, Renauld H, El-Sayed N, Berriman M Biochem Soc Trans. 2005;33;986-9. PMID: 16246028 |
| Comparisons of dN/dS are time dependent for closely related bacterial genomes. Rocha EP, Smith JM, Hurst LD, Holden MT, Cooper JE, Smith NH, Feil EJ J Theor Biol. 2005;. PMID: 16239014 |
| Microbial mariners. Holden M, Thomson N, Bentley S Nat Rev Microbiol. 2005;3;748-9. PMID: 16231859 |
| Alteration of host cell phenotype by Theileria annulata and Theileria parva: mining for manipulators in the parasite genomes. Shiels B, Langsley G, Weir W, Pain A, McKellar S, Dobbelaere D Int J Parasitol. 2005;. PMID: 16221473 |
| Microarray-based comparative genomic analyses of the human malaria parasite Plasmodium falciparum using Affymetrix arrays. Carret CK, Horrocks P, Konfortov B, Winzeler E, Qureshi M, Newbold C, Ivens A Mol Biochem Parasitol. 2005;. PMID: 16174539 |
| The pCoo plasmid of enterotoxigenic Escherichia coli is a mosaic cointegrate. Froehlich B, Parkhill J, Sanders M, Quail MA, Scott JR J Bacteriol. 2005;187;6509-16. PMID: 16159784 |
| Identification of pathogen-specific genes through microarray analysis of pathogenic and commensal Neisseria species. Stabler RA, Marsden GL, Witney AA, Li Y, Bentley SD, Tang CM, Hinds J Microbiology. 2005;151;2907-22. PMID: 16151203 |
| Evolutionary History of the Coccolithoviridae. Allen MJ, Schroeder DC, Holden MT, Wilson WH Mol Biol Evol. 2005;. PMID: 16151186 |
| A feast of protozoan genomes. Hertz-Fowler C, Berriman M, Pain A Nat Rev Microbiol. 2005;3;670-1. PMID: 16145753 |
| Evidence for a dispersed Hox gene cluster in the platyhelminth parasite Schistosoma mansoni. Pierce RJ, Wu W, Hirai H, Ivens A, Murphy LD, Noël C, Johnston DA, Artiguenave F, Adams M, Cornette J, Viscogliosi E, Capron M, Balavoine G Mol Biol Evol. 2005;22;2491-503. PMID: 16120809 |
| Plasmodium falciparum Antigenic Variation: Relationships between In Vivo Selection, Acquired Antibody Response, and Disease Severity. Bull PC, Pain A, Ndungu FM, Kinyanjui SM, Roberts DJ, Newbold CI, Marsh K J Infect Dis. 2005;192;1119-26. PMID: 16107968 |
| A human-curated annotation of the Candida albicans genome. Braun BR, van Het Hoog M, d'Enfert C, Martchenko M, Dungan J, Kuo A, Inglis DO, Uhl MA, Hogues H, Berriman M, Lorenz M, Levitin A, Oberholzer U, Bachewich C, Harcus D, Marcil A, Dignard D, Iouk T, Zito R, Frangeul L, Tekaia F, Rutherford K, Wang E, Munro CA, Bates S, Gow NA, Hoyer LL, Köhler G, Morschhäuser J, Newport G, Znaidi S, Raymond M, Turcotte B, Sherlock G, Costanzo M, Ihmels J, Berman J, Sanglard D, Agabian N, Mitchell AP, Johnson AD, Whiteway M, Nantel A PLoS Genet. 2005;1;36-57. PMID: 16103911 |
| Complete genome sequence and lytic phase transcription profile of a Coccolithovirus. Wilson WH, Schroeder DC, Allen MJ, Holden MT, Parkhill J, Barrell BG, Churcher C, Hamlin N, Mungall K, Norbertczak H, Quail MA, Price C, Rabbinowitsch E, Walker D, Craigon M, Roy D, Ghazal P Science. 2005;309;1090-2. PMID: 16099989 |
| Massive attack. Thomson N, Cerdeño-Tárraga A, Bentley S Nat Rev Microbiol. 2005;3;586-7. PMID: 16094740 |
| The genome of the kinetoplastid parasite, Leishmania major. Ivens AC, Peacock CS, Worthey EA, Murphy L, Aggarwal G, Berriman M, Sisk E, Rajandream MA, Adlem E, Aert R, Anupama A, Apostolou Z, Attipoe P, Bason N, Bauser C, Beck A, Beverley SM, Bianchettin G, Borzym K, Bothe G, Bruschi CV, Collins M, Cadag E, Ciarloni L, Clayton C, Coulson RM, Cronin A, Cruz AK, Davies RM, De Gaudenzi J, Dobson DE, Duesterhoeft A, Fazelina G, Fosker N, Frasch AC, Fraser A, Fuchs M, Gabel C, Goble A, Goffeau A, Harris D, Hertz-Fowler C, Hilbert H, Horn D, Huang Y, Klages S, Knights A, Kube M, Larke N, Litvin L, Lord A, Louie T, Marra M, Masuy D, Matthews K, Michaeli S, Mottram JC, Müller-Auer S, Munden H, Nelson S, Norbertczak H, Oliver K, O'neil S, Pentony M, Pohl TM, Price C, Purnelle B, Quail MA, Rabbinowitsch E, Reinhardt R, Rieger M, Rinta J, Robben J, Robertson L, Ruiz JC, Rutter S, Saunders D, Schäfer M, Schein J, Schwartz DC, Seeger K, Seyler A, Sharp S, Shin H, Sivam D, Squares R, Squares S, Tosato V, Vogt C, Volckaert G, Wambutt R, Warren T, Wedler H, Woodward J, Zhou S, Zimmermann W, Smith DF, Blackwell JM, Stuart KD, Barrell B, Myler PJ Science. 2005;309;436-42. PMID: 16020728 |
| The genome of the African trypanosome Trypanosoma brucei. Berriman M, Ghedin E, Hertz-Fowler C, Blandin G, Renauld H, Bartholomeu DC, Lennard NJ, Caler E, Hamlin NE, Haas B, Böhme U, Hannick L, Aslett MA, Shallom J, Marcello L, Hou L, Wickstead B, Alsmark UC, Arrowsmith C, Atkin RJ, Barron AJ, Bringaud F, Brooks K, Carrington M, Cherevach I, Chillingworth TJ, Churcher C, Clark LN, Corton CH, Cronin A, Davies RM, Doggett J, Djikeng A, Feldblyum T, Field MC, Fraser A, Goodhead I, Hance Z, Harper D, Harris BR, Hauser H, Hostetler J, Ivens A, Jagels K, Johnson D, Johnson J, Jones K, Kerhornou AX, Koo H, Larke N, Landfear S, Larkin C, Leech V, Line A, Lord A, Macleod A, Mooney PJ, Moule S, Martin DM, Morgan GW, Mungall K, Norbertczak H, Ormond D, Pai G, Peacock CS, Peterson J, Quail MA, Rabbinowitsch E, Rajandream MA, Reitter C, Salzberg SL, Sanders M, Schobel S, Sharp S, Simmonds M, Simpson AJ, Tallon L, Turner CM, Tait A, Tivey AR, Van Aken S, Walker D, Wanless D, Wang S, White B, White O, Whitehead S, Woodward J, Wortman J, Adams MD, Embley TM, Gull K, Ullu E, Barry JD, Fairlamb AH, Opperdoes F, Barrell BG, Donelson JE, Hall N, Fraser CM, Melville SE, El-Sayed NM Science. 2005;309;416-22. PMID: 16020726 |
| Comparative genomics of trypanosomatid parasitic protozoa. El-Sayed NM, Myler PJ, Blandin G, Berriman M, Crabtree J, Aggarwal G, Caler E, Renauld H, Worthey EA, Hertz-Fowler C, Ghedin E, Peacock C, Bartholomeu DC, Haas BJ, Tran AN, Wortman JR, Alsmark UC, Angiuoli S, Anupama A, Badger J, Bringaud F, Cadag E, Carlton JM, Cerqueira GC, Creasy T, Delcher AL, Djikeng A, Embley TM, Hauser C, Ivens AC, Kummerfeld SK, Pereira-Leal JB, Nilsson D, Peterson J, Salzberg SL, Shallom J, Silva JC, Sundaram J, Westenberger S, White O, Melville SE, Donelson JE, Andersson B, Stuart KD, Hall N Science. 2005;309;404-9. PMID: 16020724 |
| Wolbachia variability and host effects on crossing type in Culex mosquitoes. Sinkins SP, Walker T, Lynd AR, Steven AR, Makepeace BL, Godfray HC, Parkhill J Nature. 2005;436;257-60. PMID: 16015330 |
| Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes. Gardner MJ, Bishop R, Shah T, de Villiers EP, Carlton JM, Hall N, Ren Q, Paulsen IT, Pain A, Berriman M, Wilson RJ, Sato S, Ralph SA, Mann DJ, Xiong Z, Shallom SJ, Weidman J, Jiang L, Lynn J, Weaver B, Shoaibi A, Domingo AR, Wasawo D, Crabtree J, Wortman JR, Haas B, Angiuoli SV, Creasy TH, Lu C, Suh B, Silva JC, Utterback TR, Feldblyum TV, Pertea M, Allen J, Nierman WC, Taracha EL, Salzberg SL, White OR, Fitzhugh HA, Morzaria S, Venter JC, Fraser CM, Nene V Science. 2005;309;134-7. PMID: 15994558 |
| Genome of the host-cell transforming parasite Theileria annulata compared with T. parva. Pain A, Renauld H, Berriman M, Murphy L, Yeats CA, Weir W, Kerhornou A, Aslett M, Bishop R, Bouchier C, Cochet M, Coulson RM, Cronin A, de Villiers EP, Fraser A, Fosker N, Gardner M, Goble A, Griffiths-Jones S, Harris DE, Katzer F, Larke N, Lord A, Maser P, McKellar S, Mooney P, Morton F, Nene V, O'Neil S, Price C, Quail MA, Rabbinowitsch E, Rawlings ND, Rutter S, Saunders D, Seeger K, Shah T, Squares R, Squares S, Tivey A, Walker AR, Woodward J, Dobbelaere DA, Langsley G, Rajandream MA, McKeever D, Shiels B, Tait A, Barrell B, Hall N Science. 2005;309;131-3. PMID: 15994557 |
| ACT: the Artemis Comparison Tool. Carver TJ, Rutherford KM, Berriman M, Rajandream MA, Barrell BG, Parkhill J Bioinformatics. 2005;21;3422-3. PMID: 15976072 DOI: 10.1093/bioinformatics/bti553 |
| Gene Arrays at Pneumocystis carinii Telomeres. Keely SP, Renauld H, Wakefield AE, Cushion MT, Smulian AG, Fosker N, Fraser A, Harris D, Murphy L, Price C, Quail MA, Seeger K, Sharp S, Tindal CJ, Warren T, Zuiderwijk E, Barrell BG, Stringer JR, Hall N Genetics. 2005;170;1589-600. PMID: 15965256 |
| Comparative apicomplexan genomics. Pain A, Crossman L, Parkhill J Nat Rev Microbiol. 2005;3;454-5. PMID: 15934186 |
| Composite genome map and recombination parameters derived from three archetypal lineages of Toxoplasma gondii. Khan A, Taylor S, Su C, Mackey AJ, Boyle J, Cole R, Glover D, Tang K, Paulsen IT, Berriman M, Boothroyd JC, Pfefferkorn ER, Dubey JP, Ajioka JW, Roos DS, Wootton JC, Sibley LD Nucleic Acids Res. 2005;33;2980-92. PMID: 15911631 |
| An ancestral oomycete locus contains late blight avirulence gene Avr3a, encoding a protein that is recognized in the host cytoplasm. Armstrong MR, Whisson SC, Pritchard L, Bos JI, Venter E, Avrova AO, Rehmany AP, Böhme U, Brooks K, Cherevach I, Hamlin N, White B, Fraser A, Lord A, Quail MA, Churcher C, Hall N, Berriman M, Huang S, Kamoun S, Beynon JL, Birch PR Proc Natl Acad Sci U S A. 2005;102;7766-71. PMID: 15894622 |
| The genome of the social amoeba Dictyostelium discoideum. Eichinger L, Pachebat JA, Glöckner G, Rajandream MA, Sucgang R, Berriman M, Song J, Olsen R, Szafranski K, Xu Q, Tunggal B, Kummerfeld S, Madera M, Konfortov BA, Rivero F, Bankier AT, Lehmann R, Hamlin N, Davies R, Gaudet P, Fey P, Pilcher K, Chen G, Saunders D, Sodergren E, Davis P, Kerhornou A, Nie X, Hall N, Anjard C, Hemphill L, Bason N, Farbrother P, Desany B, Just E, Morio T, Rost R, Churcher C, Cooper J, Haydock S, van Driessche N, Cronin A, Goodhead I, Muzny D, Mourier T, Pain A, Lu M, Harper D, Lindsay R, Hauser H, James K, Quiles M, Madan Babu M, Saito T, Buchrieser C, Wardroper A, Felder M, Thangavelu M, Johnson D, Knights A, Loulseged H, Mungall K, Oliver K, Price C, Quail MA, Urushihara H, Hernandez J, Rabbinowitsch E, Steffen D, Sanders M, Ma J, Kohara Y, Sharp S, Simmonds M, Spiegler S, Tivey A, Sugano S, White B, Walker D, Woodward J, Winckler T, Tanaka Y, Shaulsky G, Schleicher M, Weinstock G, Rosenthal A, Cox EC, Chisholm RL, Gibbs R, Loomis WF, Platzer M, Kay RR, Williams J, Dear PH, Noegel AA, Barrell B, Kuspa A Nature. 2005;435;43-57. PMID: 15875012 |
| GI genomes. Cerdeño-Tárraga A, Claesson MJ, Sebaihia M, Thomson NR Nat Rev Microbiol. 2005;3;368-9. PMID: 15871171 |
| Evolution of Noncoding and Silent Coding Sites in the Plasmodium falciparum and Plasmodium reichenowi Genomes. Neafsey DE, Hartl DL, Berriman M Mol Biol Evol. 2005;22;1621-1626. PMID: 15858207 |
| The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation. Thomson NR, Yeats C, Bell K, Holden MT, Bentley SD, Livingstone M, Cerdeño-Tárraga AM, Harris B, Doggett J, Ormond D, Mungall K, Clarke K, Feltwell T, Hance Z, Sanders M, Quail MA, Price C, Barrell BG, Parkhill J, Longbottom D Genome Res. 2005;. PMID: 15837807 |
| Identification of DNA markers for a transmissible Pseudomonas aeruginosa cystic fibrosis strain. Lewis DA, Jones A, Parkhill J, Speert DP, Govan JR, Lipuma JJ, Lory S, Webb AK, Mahenthiralingam E Am J Respir Cell Mol Biol. 2005;33;56-64. PMID: 15834046 |
| Novel quorum-sensing-controlled genes in Erwinia carotovora subsp. carotovora: identification of a fungal elicitor homologue in a soft-rotting bacterium. Pemberton CL, Whitehead NA, Sebaihia M, Bell KS, Hyman LJ, Harris SJ, Matlin AJ, Robson ND, Birch PR, Carr JP, Toth IK, Salmond GP Mol Plant Microbe Interact. 2005;18;343-53. PMID: 15828686 |
| Integration of tools and resources for display and analysis of genomic data for protozoan parasites. Aslett M, Mooney P, Adlem E, Berriman M, Berry A, Hertz-Fowler C, Ivens AC, Kerhornou A, Parkhill J, Peacock CS, Wood V, Rajandream MA, Barrell B, Tivey A Int J Parasitol. 2005;35;481-93. PMID: 15826641 |
| Livelihood hazards. Sebaihia M, Thomson NR, Crossman L, Parkhill J Nat Rev Microbiol. 2005;3;278-9. PMID: 15818892 |
| Analysis of the hypervariable region of the Salmonella enterica genome associated with tRNA(leuX). Bishop AL, Baker S, Jenks S, Fookes M, Gaora PO, Pickard D, Anjum M, Farrar J, Hien TT, Ivens A, Dougan G J Bacteriol. 2005;187;2469-82. PMID: 15774890 |
| Sequencing the environment. Crossman L, Sebaihia M, Cerdeño-Tárraga A, Parkhill J Nat Rev Microbiol. 2004;2;184-5. PMID: 15751186 |
| Extensive DNA inversions in the B. fragilis genome control variable gene expression. Cerdeño-Tárraga AM, Patrick S, Crossman LC, Blakely G, Abratt V, Lennard N, Poxton I, Duerden B, Harris B, Quail MA, Barron A, Clark L, Corton C, Doggett J, Holden MT, Larke N, Line A, Lord A, Norbertczak H, Ormond D, Price C, Rabbinowitsch E, Woodward J, Barrell B, Parkhill J Science. 2005;307;1463-5. PMID: 15746427 |
| Diversity at every level. Crossman L, Cerdeño-Tárraga A, Parkhill J Nat Rev Microbiol. 2005;3;196-7. PMID: 15742523 |
| A case for a Glossina genome project. Aksoy S, Berriman M, Hall N, Hattori M, Hide W, Lehane MJ Trends Parasitol. 2005;21;107-11. PMID: 15734656 |
| The genome of the protist parasite Entamoeba histolytica. Loftus B, Anderson I, Davies R, Alsmark UC, Samuelson J, Amedeo P, Roncaglia P, Berriman M, Hirt RP, Mann BJ, Nozaki T, Suh B, Pop M, Duchene M, Ackers J, Tannich E, Leippe M, Hofer M, Bruchhaus I, Willhoeft U, Bhattacharya A, Chillingworth T, Churcher C, Hance Z, Harris B, Harris D, Jagels K, Moule S, Mungall K, Ormond D, Squares R, Whitehead S, Quail MA, Rabbinowitsch E, Norbertczak H, Price C, Wang Z, Guillén N, Gilchrist C, Stroup SE, Bhattacharya S, Lohia A, Foster PG, Sicheritz-Ponten T, Weber C, Singh U, Mukherjee C, El-Sayed NM, Petri WA, Clark CG, Embley TM, Barrell B, Fraser CM, Hall N Nature. 2005;433;865-8. PMID: 15729342 |
| Brothers in arms. Thomson N, Holden M, Parkhill J Nat Rev Microbiol. 2005;3;100-1. PMID: 15693175 |
| The Flag-2 locus, an ancestral gene cluster, is potentially associated with a novel flagellar system from Escherichia coli. Ren CP, Beatson SA, Parkhill J, Pallen MJ J Bacteriol. 2005;187;1430-40. PMID: 15687208 |
| Plasmid replicons of Rhizobium. Crossman LC Biochem Soc Trans. 2005;33;157-8. PMID: 15667292 |
| A selenocysteine tRNA and SECIS element in Plasmodium falciparum. Mourier T, Pain A, Barrell B, Griffiths-Jones S RNA. 2005;11;119-22. PMID: 15659354 |
| Carbapenem antibiotic biosynthesis in Erwinia carotovora is regulated by physiological and genetic factors modulating the quorum sensing-dependent control pathway. McGowan SJ, Barnard AM, Bosgelmez G, Sebaihia M, Simpson NJ, Thomson NR, Todd DE, Welch M, Whitehead NA, Salmond GP Mol Microbiol. 2005;55;526-45. PMID: 15659168 |
| A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses. Hall N, Karras M, Raine JD, Carlton JM, Kooij TW, Berriman M, Florens L, Janssen CS, Pain A, Christophides GK, James K, Rutherford K, Harris B, Harris D, Churcher C, Quail MA, Ormond D, Doggett J, Trueman HE, Mendoza J, Bidwell SL, Rajandream MA, Carucci DJ, Yates JR, Kafatos FC, Janse CJ, Barrell B, Turner CM, Waters AP, Sinden RE Science. 2005;307;82-6. PMID: 15637271 |
| The genome of the heartwater agent Ehrlichia ruminantium contains multiple tandem repeats of actively variable copy number. Collins NE, Liebenberg J, de Villiers EP, Brayton KA, Louw E, Pretorius A, Faber FE, van Heerden H, Josemans A, van Kleef M, Steyn HC, van Strijp MF, Zweygarth E, Jongejan F, Maillard JC, Berthier D, Botha M, Joubert F, Corton CH, Thomson NR, Allsopp MT, Allsopp BA Proc Natl Acad Sci U S A. 2005;102;838-43. PMID: 15637156 |
| Enemies within. Bentley S, Sebaihia M, Crossman L Nat Rev Microbiol. 2005;3;8-9. PMID: 15635776 |
| Analysis of Campylobacter jejuni capsular loci reveals multiple mechanisms for the generation of structural diversity and the ability to form complex heptoses. Karlyshev AV, Champion OL, Churcher C, Brisson JR, Jarrell HC, Gilbert M, Brochu D, St Michael F, Li J, Wakarchuk WW, Goodhead I, Sanders M, Stevens K, White B, Parkhill J, Wren BW, Szymanski CM Mol Microbiol. 2005;55;90-103. PMID: 15612919 |
| The G5 domain: a potential N-acetylglucosamine recognition domain involved in biofilm formation. Bateman A, Holden MT, Yeats C Bioinformatics. 2004;. PMID: 15598841 |
| Microevolution and history of the plague bacillus, Yersinia pestis. Achtman M, Morelli G, Zhu P, Wirth T, Diehl I, Kusecek B, Vogler AJ, Wagner DM, Allender CJ, Easterday WR, Chenal-Francisque V, Worsham P, Thomson NR, Parkhill J, Lindler LE, Carniel E, Keim P Proc Natl Acad Sci U S A. 2004;101;17837-42. PMID: 15598742 |
| Genomic pot pourri. Bentley S, Crossman L, Cerdeño-Tárraga A, Parkhill J Nat Rev Microbiol. 2004;2;928-9. PMID: 15580690 |
| Complete nucleotide sequence of the conjugative tetracycline resistance plasmid pFBAOT6, a member of a group of IncU plasmids with global ubiquity. Rhodes G, Parkhill J, Bird C, Ambrose K, Jones MC, Huys G, Swings J, Pickup RW Appl Environ Microbiol. 2004;70;7497-510. PMID: 15574953 |
| Comparative genomic structure of prokaryotes. Bentley SD, Parkhill J Annu Rev Genet. 2004;38;771-92. PMID: 15568993 |
| GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes. Martin DM, Berriman M, Barton GJ BMC Bioinformatics. 2004;5;178. PMID: 15550167 |
| Transferable antibiotic resistance elements in Haemophilus influenzae share a common evolutionary origin with a diverse family of syntenic genomic islands. Mohd-Zain Z, Turner SL, Cerdeño-Tárraga AM, Lilley AK, Inzana TJ, Duncan AJ, Harding RM, Hood DW, Peto TE, Crook DW J Bacteriol. 2004;186;8114-22. PMID: 15547285 |
| A transcriptomic analysis of the phylum Nematoda. Parkinson J, Mitreva M, Whitton C, Thomson M, Daub J, Martin J, Schmid R, Hall N, Barrell B, Waterston RH, McCarter JP, Blaxter ML Nat Genet. 2004;36;1259-67. PMID: 15543149 |
| Eukaryotes: not beyond compare. Pain A, Bentley S, Parkhill J Nat Rev Microbiol. 2004;2;856-7. PMID: 15523762 |
| Curation of the Plasmodium falciparum genome. Berry AE, Gardner MJ, Caspers GJ, Roos DS, Berriman M Trends Parasitol. 2004;20;548-52. PMID: 15522662 |
| The complete nucleotide sequence of the resistance plasmid R478: defining the backbone components of incompatibility group H conjugative plasmids through comparative genomics. Gilmour MW, Thomson NR, Sanders M, Parkhill J, Taylor DE Plasmid. 2004;52;182-202. PMID: 15518875 |
| Shotgun optical mapping of the entire Leishmania major Friedlin genome. Zhou S, Kile A, Kvikstad E, Bechner M, Severin J, Forrest D, Runnheim R, Churas C, Anantharaman TS, Myler P, Vogt C, Ivens A, Stuart K, Schwartz DC Mol Biochem Parasitol. 2004;138;97-106. PMID: 15500921 |
| Pathogens in decay. Cerdeño-Tárraga A, Thomson N, Parkhill J Nat Rev Microbiol. 2004;2;774-5. PMID: 15468460 |
| The use of genome annotation data and its impact on biological conclusions. Tettelin H, Parkhill J Nat Genet. 2004;36;1028-9. PMID: 15454934 |
| Tyrosine site-specific recombinases mediate DNA inversions affecting the expression of outer surface proteins of Bacteroides fragilis. Weinacht KG, Roche H, Krinos CM, Coyne MJ, Parkhill J, Comstock LE Mol Microbiol. 2004;53;1319-30. PMID: 15387812 |
| A genome sequence survey of the filarial nematode Brugia malayi: repeats, gene discovery, and comparative genomics. Whitton C, Daub J, Quail M, Hall N, Foster J, Ware J, Ganatra M, Slatko B, Barrell B, Blaxter M Mol Biochem Parasitol. 2004;137;215-27. PMID: 15383292 |
| Some like it hot. Sebaihia M, Crossman L, Cerdeño-Tárraga A, Holden M Nat Rev Microbiol. 2004;2;690-1. PMID: 15378808 |
| Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei. Holden MT, Titball RW, Peacock SJ, Cerdeño-Tárraga AM, Atkins T, Crossman LC, Pitt T, Churcher C, Mungall K, Bentley SD, Sebaihia M, Thomson NR, Bason N, Beacham IR, Brooks K, Brown KA, Brown NF, Challis GL, Cherevach I, Chillingworth T, Cronin A, Crossett B, Davis P, DeShazer D, Feltwell T, Fraser A, Hance Z, Hauser H, Holroyd S, Jagels K, Keith KE, Maddison M, Moule S, Price C, Quail MA, Rabbinowitsch E, Rutherford K, Sanders M, Simmonds M, Songsivilai S, Stevens K, Tumapa S, Vesaratchavest M, Whitehead S, Yeats C, Barrell BG, Oyston PC, Parkhill J Proc Natl Acad Sci U S A. 2004;101;14240-5. PMID: 15377794 |
| Genomes beyond compare. Crossman L, Holden M, Pain A, Parkhill J Nat Rev Microbiol. 2004;2;616-7. PMID: 15303267 |
| Staphylococcus aureus: superbug, super genome? Lindsay JA, Holden MT Trends Microbiol. 2004;12;378-85. PMID: 15276614 |
| Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors. Bell KS, Sebaihia M, Pritchard L, Holden MT, Hyman LJ, Holeva MC, Thomson NR, Bentley SD, Churcher LJ, Mungall K, Atkin R, Bason N, Brooks K, Chillingworth T, Clark K, Doggett J, Fraser A, Hance Z, Hauser H, Jagels K, Moule S, Norbertczak H, Ormond D, Price C, Quail MA, Sanders M, Walker D, Whitehead S, Salmond GP, Birch PR, Parkhill J, Toth IK Proc Natl Acad Sci U S A. 2004;101;11105-10. PMID: 15263089 |
| Chalk and cheese. Crossman L, Cerdeño-Tárraga A, Thomson NR Nat Rev Microbiol. 2004;2;528-9. PMID: 15248310 |
| Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance. Holden MT, Feil EJ, Lindsay JA, Peacock SJ, Day NP, Enright MC, Foster TJ, Moore CE, Hurst L, Atkin R, Barron A, Bason N, Bentley SD, Chillingworth C, Chillingworth T, Churcher C, Clark L, Corton C, Cronin A, Doggett J, Dowd L, Feltwell T, Hance Z, Harris B, Hauser H, Holroyd S, Jagels K, James KD, Lennard N, Line A, Mayes R, Moule S, Mungall K, Ormond D, Quail MA, Rabbinowitsch E, Rutherford K, Sanders M, Sharp S, Simmonds M, Stevens K, Whitehead S, Barrell BG, Spratt BG, Parkhill J Proc Natl Acad Sci U S A. 2004;101;9786-91. PMID: 15213324 |
| Variation in the effectors of the type III secretion system among Photorhabdus species as revealed by genomic analysis. Brugirard-Ricaud K, Givaudan A, Parkhill J, Boemare N, Kunst F, Zumbihl R, Duchaud E J Bacteriol. 2004;186;4376-81. PMID: 15205440 |
| Continuing tsetse and Trypanosoma genome sequencing projects. Hertz-Fowler C, Berriman M Trends Parasitol. 2004;20;308-9; author reply 309-10. PMID: 15193559 |
| New environments, versatile genomes. Cerdeño-Tárraga A, Crossman L, Parkhill J Nat Rev Microbiol. 2004;2;446-7. PMID: 15181901 |
| Biofilm formation and dispersal in Xanthomonas campestris. Crossman L, Dow JM Microbes Infect. 2004;6;623-9. PMID: 15158198 |
| Parasite genome databases and web-based resources. Hertz-Fowler C, Hall N Methods Mol Biol. 2004;270;45-74. PMID: 15153622 |
| Annotation of parasite genomes. Berriman M, Harris M Methods Mol Biol. 2004;270;17-44. PMID: 15153621 |
| The role of prophage-like elements in the diversity of Salmonella enterica serovars. Thomson N, Baker S, Pickard D, Fookes M, Anjum M, Hamlin N, Wain J, House D, Bhutta Z, Chan K, Falkow S, Parkhill J, Woodward M, Ivens A, Dougan G J Mol Biol. 2004;339;279-300. PMID: 15136033 |
| Strength in diversity. Pain A, Crossman L, Sebaihia M, Cerdeño-Tárraga A, Parkhill J Nat Rev Microbiol. 2004;2;358-9. PMID: 15134078 |
| Comparative cell wall core biosynthesis in the mycolated pathogens, Mycobacterium tuberculosis and Corynebacterium diphtheriae. Dover LG, Cerdeño-Tárraga AM, Pallen MJ, Parkhill J, Besra GS FEMS Microbiol Rev. 2004;28;225-50. PMID: 15109786 |
| The Eimeria genome projects: a sequence of events. Shirley MW, Ivens A, Gruber A, Madeira AM, Wan KL, Dear PH, Tomley FM Trends Parasitol. 2004;20;199-201. PMID: 15105014 |
| The bordetellae: lessons from genomics. Preston A, Parkhill J, Maskell DJ Nat Rev Microbiol. 2004;2;379-90. PMID: 15100691 |
| Advances in schistosome genomics. El-Sayed NM, Bartholomeu D, Ivens A, Johnston DA, LoVerde PT Trends Parasitol. 2004;20;154-7. PMID: 15099549 |
| Bioinformatic identification of novel regulatory DNA sequence motifs in Streptomyces coelicolor. Studholme DJ, Bentley SD, Kormanec J BMC Microbiol. 2004;4;14. PMID: 15072583 |
| Pathogenomics of non-pathogens. Holden M, Crossman L, Cerdeño-Tárraga A, Parkhill J Nat Rev Microbiol. 2004;2;91. PMID: 15040257 |
| Shrinking genomics. Thomson NR, Sebaihia M, Cerdeño-Tárraga AM, Holden MT, Parkhill J Nat Rev Microbiol. 2004;2;11. PMID: 15035003 |
| SCP1, a 356,023 bp linear plasmid adapted to the ecology and developmental biology of its host, Streptomyces coelicolor A3(2). Bentley SD, Brown S, Murphy LD, Harris DE, Quail MA, Parkhill J, Barrell BG, McCormick JR, Santamaria RI, Losick R, Yamasaki M, Kinashi H, Chen CW, Chandra G, Jakimowicz D, Kieser HM, Kieser T, Chater KF Mol Microbiol. 2004;51;1615-28. PMID: 15009889 |
| Gene synteny and evolution of genome architecture in trypanosomatids. Ghedin E, Bringaud F, Peterson J, Myler P, Berriman M, Ivens A, Andersson B, Bontempi E, Eisen J, Angiuoli S, Wanless D, Von Arx A, Murphy L, Lennard N, Salzberg S, Adams MD, White O, Hall N, Stuart K, Fraser CM, El-Sayed NM Mol Biochem Parasitol. 2004;134;183-91. PMID: 15003838 |
| Insight into the genome of Aspergillus fumigatus: analysis of a 922 kb region encompassing the nitrate assimilation gene cluster. Pain A, Woodward J, Quail MA, Anderson MJ, Clark R, Collins M, Fosker N, Fraser A, Harris D, Larke N, Murphy L, Humphray S, O'Neil S, Pertea M, Price C, Rabbinowitsch E, Rajandream MA, Salzberg S, Saunders D, Seeger K, Sharp S, Warren T, Denning DW, Barrell B, Hall N Fungal Genet Biol. 2004;41;443-53. PMID: 14998527 |
| The Burkholderia cepacia epidemic strain marker is part of a novel genomic island encoding both virulence and metabolism-associated genes in Burkholderia cenocepacia. Baldwin A, Sokol PA, Parkhill J, Mahenthiralingam E Infect Immun. 2004;72;1537-47. PMID: 14977960 |
| Genomic and genetic analysis of Bordetella bacteriophages encoding reverse transcriptase-mediated tropism-switching cassettes. Liu M, Gingery M, Doulatov SR, Liu Y, Hodes A, Baker S, Davis P, Simmonds M, Churcher C, Mungall K, Quail MA, Preston A, Harvill ET, Maskell DJ, Eiserling FA, Parkhill J, Miller JF J Bacteriol. 2004;186;1503-17. PMID: 14973019 |
| Genome-wide scans for leprosy and tuberculosis susceptibility genes in Brazilians. Miller EN, Jamieson SE, Joberty C, Fakiola M, Hudson D, Peacock CS, Cordell HJ, Shaw MA, Lins-Lainson Z, Shaw JJ, Ramos F, Silveira F, Blackwell JM Genes Immun. 2004;5;63-7. PMID: 14735151 |
| Evidence for a cluster of genes on chromosome 17q11-q21 controlling susceptibility to tuberculosis and leprosy in Brazilians. Jamieson SE, Miller EN, Black GF, Peacock CS, Cordell HJ, Howson JM, Shaw MA, Burgner D, Xu W, Lins-Lainson Z, Shaw JJ, Ramos F, Silveira F, Blackwell JM Genes Immun. 2004;5;46-57. PMID: 14735149 |
| The ingi and RIME non-LTR retrotransposons are not randomly distributed in the genome of Trypanosoma brucei. Bringaud F, Biteau N, Zuiderwijk E, Berriman M, El-Sayed NM, Ghedin E, Melville SE, Hall N, Baltz T Mol Biol Evol. 2004;21;520-8. PMID: 14694076 |
| GeneDB: a resource for prokaryotic and eukaryotic organisms. Hertz-Fowler C, Peacock CS, Wood V, Aslett M, Kerhornou A, Mooney P, Tivey A, Berriman M, Hall N, Rutherford K, Parkhill J, Ivens AC, Rajandream MA, Barrell B Nucleic Acids Res. 2004;32;D339-43. PMID: 14681429 |
| The Gene Ontology (GO) database and informatics resource. Harris MA, Clark J, Ireland A, Lomax J, Ashburner M, Foulger R, Eilbeck K, Lewis S, Marshall B, Mungall C, Richter J, Rubin GM, Blake JA, Bult C, Dolan M, Drabkin H, Eppig JT, Hill DP, Ni L, Ringwald M, Balakrishnan R, Cherry JM, Christie KR, Costanzo MC, Dwight SS, Engel S, Fisk DG, Hirschman JE, Hong EL, Nash RS, Sethuraman A, Theesfeld CL, Botstein D, Dolinski K, Feierbach B, Berardini T, Mundodi S, Rhee SY, Apweiler R, Barrell D, Camon E, Dimmer E, Lee V, Chisholm R, Gaudet P, Kibbe W, Kishore R, Schwarz EM, Sternberg P, Gwinn M, Hannick L, Wortman J, Berriman M, Wood V, de la Cruz N, Tonellato P, Jaiswal P, Seigfried T, White R, Gene Ontology Consortium Nucleic Acids Res. 2004;32;D258-61. PMID: 14681407 |
| The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129. Cerdeño-Tárraga AM, Efstratiou A, Dover LG, Holden MT, Pallen M, Bentley SD, Besra GS, Churcher C, James KD, De Zoysa A, Chillingworth T, Cronin A, Dowd L, Feltwell T, Hamlin N, Holroyd S, Jagels K, Moule S, Quail MA, Rabbinowitsch E, Rutherford KM, Thomson NR, Unwin L, Whitehead S, Barrell BG, Parkhill J Nucleic Acids Res. 2003;31;6516-23. PMID: 14602910 |
| SLC11A1 (formerly NRAMP1) and susceptibility to visceral leishmaniasis in The Sudan. Mohamed HS, Ibrahim ME, Miller EN, White JK, Cordell HJ, Howson JM, Peacock CS, Khalil EA, El Hassan AM, Blackwell JM Eur J Hum Genet. 2004;12;66-74. PMID: 14523377 |
| Adult midgut expressed sequence tags from the tsetse fly Glossina morsitans morsitans and expression analysis of putative immune response genes. Lehane MJ, Aksoy S, Gibson W, Kerhornou A, Berriman M, Hamilton J, Soares MB, Bonaldo MF, Lehane S, Hall N Genome Biol. 2003;4;R63. PMID: 14519198 |
| Molecular analysis of incHI1 antimicrobial resistance plasmids from Salmonella serovar Typhi strains associated with typhoid fever. Wain J, Diem Nga LT, Kidgell C, James K, Fortune S, Song Diep T, Ali T, O Gaora P, Parry C, Parkhill J, Farrar J, White NJ, Dougan G Antimicrob Agents Chemother. 2003;47;2732-9. PMID: 12936967 |
| Composition, acquisition, and distribution of the Vi exopolysaccharide-encoding Salmonella enterica pathogenicity island SPI-7. Pickard D, Wain J, Baker S, Line A, Chohan S, Fookes M, Barron A, Gaora PO, Chabalgoity JA, Thanky N, Scholes C, Thomson N, Quail M, Parkhill J, Dougan G J Bacteriol. 2003;185;5055-65. PMID: 12923078 |
| Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica. Parkhill J, Sebaihia M, Preston A, Murphy LD, Thomson N, Harris DE, Holden MT, Churcher CM, Bentley SD, Mungall KL, Cerdeño-Tárraga AM, Temple L, James K, Harris B, Quail MA, Achtman M, Atkin R, Baker S, Basham D, Bason N, Cherevach I, Chillingworth T, Collins M, Cronin A, Davis P, Doggett J, Feltwell T, Goble A, Hamlin N, Hauser H, Holroyd S, Jagels K, Leather S, Moule S, Norberczak H, O'Neil S, Ormond D, Price C, Rabbinowitsch E, Rutter S, Sanders M, Saunders D, Seeger K, Sharp S, Simmonds M, Skelton J, Squares R, Squares S, Stevens K, Unwin L, Whitehead S, Barrell BG, Maskell DJ Nat Genet. 2003;35;32-40. PMID: 12910271 |
| The DNA sequence of chromosome I of an African trypanosome: gene content, chromosome organisation, recombination and polymorphism. Hall N, Berriman M, Lennard NJ, Harris BR, Hertz-Fowler C, Bart-Delabesse EN, Gerrard CS, Atkin RJ, Barron AJ, Bowman S, Bray-Allen SP, Bringaud F, Clark LN, Corton CH, Cronin A, Davies R, Doggett J, Fraser A, Grüter E, Hall S, Harper AD, Kay MP, Leech V, Mayes R, Price C, Quail MA, Rabbinowitsch E, Reitter C, Rutherford K, Sasse J, Sharp S, Shownkeen R, MacLeod A, Taylor S, Tweedie A, Turner CM, Tait A, Gull K, Barrell B, Melville SE Nucleic Acids Res. 2003;31;4864-73. PMID: 12907729 |
| Allele frequency and genotype distribution of polymorphisms within disease-related genes is influenced by ethnic population sub-structuring in Sudan. Bereir RE, Mohamed HS, Seielstad M, El Hassani AM, Khalil EA, Peacock CS, Blackwell JM, Ibrahim ME Genetica. 2003;119;57-63. PMID: 12903747 |
| A bad combination. Sebaihia M, Bentley S, Crossman L, Thomson N, Parkhill J Trends Microbiol. 2003;11;297-9. PMID: 12875811 |
| Genetic susceptibility to visceral leishmaniasis in The Sudan: linkage and association with IL4 and IFNGR1. Mohamed HS, Ibrahim ME, Miller EN, Peacock CS, Khalil EA, Cordell HJ, Howson JM, El Hassan AM, Bereir RE, Blackwell JM Genes Immun. 2003;4;351-5. PMID: 12847550 |
| Viewing and annotating sequence data with Artemis. Berriman M, Rutherford K Brief Bioinform. 2003;4;124-32. PMID: 12846394 |
| The devil is in the detail. Bentley SD, Thomson NR, Sebaihia M, Crossman LC, Parkhill J Trends Microbiol. 2003;11;256-8. PMID: 12823941 |
| The complete genome sequence of Mycobacterium bovis. Garnier T, Eiglmeier K, Camus JC, Medina N, Mansoor H, Pryor M, Duthoy S, Grondin S, Lacroix C, Monsempe C, Simon S, Harris B, Atkin R, Doggett J, Mayes R, Keating L, Wheeler PR, Parkhill J, Barrell BG, Cole ST, Gordon SV, Hewinson RG Proc Natl Acad Sci U S A. 2003;100;7877-82. PMID: 12788972 |
| The good, the bad and the ugly? Sebaihia M, Bentley SD, Holden MT, Parkhill J Trends Microbiol. 2003;11;204-5. PMID: 12781519 |
| Cobalamin synthesis in Yersinia enterocolitica 8081. Functional aspects of a putative metabolic island. Prentice MB, Cuccui J, Thomson N, Parkhill J, Deery E, Warren MJ Adv Exp Med Biol. 2003;529;43-6. PMID: 12756726 |
| Genomics: Relative pathogenic values. Parkhill J, Berry C Nature. 2003;423;23-5. PMID: 12721608 |
| All walks of life. Thomson NR, Cerdeño-Tárraga A, Crossman L, Sebaihia M, Parkhill J Trends Microbiol. 2003;11;159-60. PMID: 12706992 |
| Multiple inverted DNA repeats of Bacteroides fragilis that control polysaccharide antigenic variation are similar to the hin region inverted repeats of Salmonella typhimurium. Patrick S, Parkhill J, McCoy LJ, Lennard N, Larkin MJ, Collins M, Sczaniecka M, Blakely G Microbiology. 2003;149;915-24. PMID: 12686634 |
| A matter of fitness. Cerdeño-Tárraga A, Crossman L, Parkhill J Trends Microbiol. 2003;11;111-2. PMID: 12648939 |
| Sequencing and analysis of the genome of the Whipple's disease bacterium Tropheryma whipplei. Bentley SD, Maiwald M, Murphy LD, Pallen MJ, Yeats CA, Dover LG, Norbertczak HT, Besra GS, Quail MA, Harris DE, von Herbay A, Goble A, Rutter S, Squares R, Squares S, Barrell BG, Parkhill J, Relman DA Lancet. 2003;361;637-44. PMID: 12606174 |
| The building blocks of pathogenicity. Thomson NR, Parkhill J Trends Microbiol. 2003;11;66-7. PMID: 12598126 |
| The magnificent seven. Holden M, Bentley S, Sebaihia M, Thomson N, Cerdeño-Tárraga A, Parkhill J Trends Microbiol. 2003;11;12-4. PMID: 12526849 |
| A new, expressed multigene family containing a hot spot for insertion of retroelements is associated with polymorphic subtelomeric regions of Trypanosoma brucei. Bringaud F, Biteau N, Melville SE, Hez S, El-Sayed NM, Leech V, Berriman M, Hall N, Donelson JE, Baltz T Eukaryot Cell. 2002;1;137-51. PMID: 12455980 |
| Genome analysis of an inducible prophage and prophage remnants integrated in the Streptococcus pyogenes strain SF370. Canchaya C, Desiere F, McShan WM, Ferretti JJ, Parkhill J, Brüssow H Virology. 2002;302;245-58. PMID: 12441069 |
| Microbial genomics: spot the difference. . . Thomson NR, Sebaihia M, Parkhill J Trends Microbiol. 2002;10;489-90. PMID: 12419606 |
| Conservation of long-range synteny and microsynteny between the genomes of two distantly related nematodes. Guiliano DB, Hall N, Jones SJ, Clark LN, Corton CH, Barrell BG, Blaxter ML Genome Biol. 2002;3;RESEARCH0057. PMID: 12372145 |
| Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13. Hall N, Pain A, Berriman M, Churcher C, Harris B, Harris D, Mungall K, Bowman S, Atkin R, Baker S, Barron A, Brooks K, Buckee CO, Burrows C, Cherevach I, Chillingworth C, Chillingworth T, Christodoulou Z, Clark L, Clark R, Corton C, Cronin A, Davies R, Davis P, Dear P, Dearden F, Doggett J, Feltwell T, Goble A, Goodhead I, Gwilliam R, Hamlin N, Hance Z, Harper D, Hauser H, Hornsby T, Holroyd S, Horrocks P, Humphray S, Jagels K, James KD, Johnson D, Kerhornou A, Knights A, Konfortov B, Kyes S, Larke N, Lawson D, Lennard N, Line A, Maddison M, McLean J, Mooney P, Moule S, Murphy L, Oliver K, Ormond D, Price C, Quail MA, Rabbinowitsch E, Rajandream MA, Rutter S, Rutherford KM, Sanders M, Simmonds M, Seeger K, Sharp S, Smith R, Squares R, Squares S, Stevens K, Taylor K, Tivey A, Unwin L, Whitehead S, Woodward J, Sulston JE, Craig A, Newbold C, Barrell BG Nature. 2002;419;527-31. PMID: 12368867 |
| Genome sequence of the human malaria parasite Plasmodium falciparum. Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE, Bowman S, Paulsen IT, James K, Eisen JA, Rutherford K, Salzberg SL, Craig A, Kyes S, Chan MS, Nene V, Shallom SJ, Suh B, Peterson J, Angiuoli S, Pertea M, Allen J, Selengut J, Haft D, Mather MW, Vaidya AB, Martin DM, Fairlamb AH, Fraunholz MJ, Roos DS, Ralph SA, McFadden GI, Cummings LM, Subramanian GM, Mungall C, Venter JC, Carucci DJ, Hoffman SL, Newbold C, Davis RW, Fraser CM, Barrell B Nature. 2002;419;498-511. PMID: 12368864 |
| Complete sequence and organization of pBtoxis, the toxin-coding plasmid of Bacillus thuringiensis subsp. israelensis. Berry C, O'Neil S, Ben-Dov E, Jones AF, Murphy L, Quail MA, Holden MT, Harris D, Zaritsky A, Parkhill J Appl Environ Microbiol. 2002;68;5082-95. PMID: 12324359 |
| Sibling rivalry. Thomson N, Sebaihia M, Cerdeño-Tárraga A, Parkhill J Trends Microbiol. 2002;10;396-7. PMID: 12217499 |
| Searching for clues. Holden M, Sebaihia M, Bentley S, Parkhill J Trends Microbiol. 2002;10;354-5. PMID: 12160625 |
| Characterisation and distribution of a cryptic Salmonella typhi plasmid pHCM2. Kidgell C, Pickard D, Wain J, James K, Diem Nga LT, Diep TS, Levine MM, O'Gaora P, Prentice MB, Parkhill J, Day N, Farrar J, Dougan G Plasmid. 2002;47;159-71. PMID: 12151231 |
| Genome giants. Sebaihia M, Bentley S, Thomson N, Holden M, Parkhill J Trends Microbiol. 2002;10;309-10. PMID: 12110204 |
| The architecture of variant surface glycoprotein gene expression sites in Trypanosoma brucei. Berriman M, Hall N, Sheader K, Bringaud F, Tiwari B, Isobe T, Bowman S, Corton C, Clark L, Cross GA, Hoek M, Zanders T, Berberof M, Borst P, Rudenko G Mol Biochem Parasitol. 2002;122;131-40. PMID: 12106867 |
| Tales of the unexpected. Sebaihia M, Bentley S, Thomson N, Holden M, Parkhill J Trends Microbiol. 2002;10;261-2. PMID: 12088653 |
| Restricting genome data won't stop bioterrorism. Read TD, Parkhill J Nature. 2002;417;379. PMID: 12024189 |
| Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2). Bentley SD, Chater KF, Cerdeño-Tárraga AM, Challis GL, Thomson NR, James KD, Harris DE, Quail MA, Kieser H, Harper D, Bateman A, Brown S, Chandra G, Chen CW, Collins M, Cronin A, Fraser A, Goble A, Hidalgo J, Hornsby T, Howarth S, Huang CH, Kieser T, Larke L, Murphy L, Oliver K, O'Neil S, Rabbinowitsch E, Rajandream MA, Rutherford K, Rutter S, Seeger K, Saunders D, Sharp S, Squares R, Squares S, Taylor K, Warren T, Wietzorrek A, Woodward J, Barrell BG, Parkhill J, Hopwood DA Nature. 2002;417;141-7. PMID: 12000953 |
| The importance of complete genome sequences. Parkhill J Trends Microbiol. 2002;10;219-20; author reply 220. PMID: 11973153 |
| Unlocking the genome of the human typhoid bacillus. Wain J, House D, Parkhill J, Parry C, Dougan G Lancet Infect Dis. 2002;2;163-70. PMID: 11944186 |
| Characterisation of transcripts from the human cytomegalovirus genes TRL7, UL20a, UL36, UL65, UL94, US3 and US34. Scott GM, Barrell BG, Oram J, Rawlinson WD Virus Genes. 2002;24;39-48. PMID: 11928987 |
| The mei3 region of the Schizosaccharomyces pombe genome. Aves SJ, Hunt C, Xiang Z, Lyne MH, Wood V, Rajandream MA, Skelton J, Churcher CM, Warren T, Harris D, Gwilliam R, Barrell BG Yeast. 2002;19;521-7. PMID: 11921100 |
| Armed to the teeth. Bentley S, Holden M, Thomson N, Parkhill J Trends Microbiol. 2002;10;163-4. PMID: 11912016 |
| Detailed structure of Pneumocystis carinii chromosome ends. Keely SP, Wakefield AE, Cushion MT, Smulian AG, Hall N, Barrell BG, Stringer JR J Eukaryot Microbiol. 2001;Suppl;118S-120S. PMID: 11906018 |
| Reverse transcriptase-mediated tropism switching in Bordetella bacteriophage. Liu M, Deora R, Doulatov SR, Gingery M, Eiserling FA, Preston A, Maskell DJ, Simons RW, Cotter PA, Parkhill J, Miller JF Science. 2002;295;2091-4. PMID: 11896279 |
| Split personalities. Holden M, Sebaihia M, Cerdeño-Tárraga A, Parkhill J Trends Microbiol. 2002;10;115. PMID: 11864813 |
| The genome sequence of Schizosaccharomyces pombe. Wood V, Gwilliam R, Rajandream MA, Lyne M, Lyne R, Stewart A, Sgouros J, Peat N, Hayles J, Baker S, Basham D, Bowman S, Brooks K, Brown D, Brown S, Chillingworth T, Churcher C, Collins M, Connor R, Cronin A, Davis P, Feltwell T, Fraser A, Gentles S, Goble A, Hamlin N, Harris D, Hidalgo J, Hodgson G, Holroyd S, Hornsby T, Howarth S, Huckle EJ, Hunt S, Jagels K, James K, Jones L, Jones M, Leather S, McDonald S, McLean J, Mooney P, Moule S, Mungall K, Murphy L, Niblett D, Odell C, Oliver K, O'Neil S, Pearson D, Quail MA, Rabbinowitsch E, Rutherford K, Rutter S, Saunders D, Seeger K, Sharp S, Skelton J, Simmonds M, Squares R, Squares S, Stevens K, Taylor K, Taylor RG, Tivey A, Walsh S, Warren T, Whitehead S, Woodward J, Volckaert G, Aert R, Robben J, Grymonprez B, Weltjens I, Vanstreels E, Rieger M, Schäfer M, Müller-Auer S, Gabel C, Fuchs M, Düsterhöft A, Fritzc C, Holzer E, Moestl D, Hilbert H, Borzym K, Langer I, Beck A, Lehrach H, Reinhardt R, Pohl TM, Eger P, Zimmermann W, Wedler H, Wambutt R, Purnelle B, Goffeau A, Cadieu E, Dréano S, Gloux S, Lelaure V, Mottier S, Galibert F, Aves SJ, Xiang Z, Hunt C, Moore K, Hurst SM, Lucas M, Rochet M, Gaillardin C, Tallada VA, Garzon A, Thode G, Daga RR, Cruzado L, Jimenez J, Sánchez M, del Rey F, Benito J, Domínguez A, Revuelta JL, Moreno S, Armstrong J, Forsburg SL, Cerutti L, Lowe T, McCombie WR, Paulsen I, Potashkin J, Shpakovski GV, Ussery D, Barrell BG, Nurse P, Cerrutti L Nature. 2002;415;871-80. PMID: 11859360 |
| The decaying genome of Mycobacterium leprae. Eiglmeier K, Parkhill J, Honoré N, Garnier T, Tekaia F, Telenti A, Klatser P, James KD, Thomson NR, Wheeler PR, Churcher C, Harris D, Mungall K, Barrell BG, Cole ST Lepr Rev. 2001;72;387-98. PMID: 11826475 |
| Lost and found. Cerdeño-Tárraga A, Thomson N, Holden M, Sebaihia M, Parkhill J Trends Microbiol. 2001;9;526-7. PMID: 11825692 |
| Mapping and identification of essential gene functions on the X chromosome of Drosophila. Peter A, Schöttler P, Werner M, Beinert N, Dowe G, Burkert P, Mourkioti F, Dentzer L, He Y, Deak P, Benos PV, Gatt MK, Murphy L, Harris D, Barrell B, Ferraz C, Vidal S, Brun C, Demaille J, Cadieu E, Dreano S, Gloux S, Lelaure V, Mottier S, Galibert F, Borkova D, Miñana B, Kafatos FC, Bolshakov S, Sidén-Kiamos I, Papagiannakis G, Spanos L, Louis C, Madueño E, de Pablos B, Modolell J, Bucheton A, Callister D, Campbell L, Henderson NS, McMillan PJ, Salles C, Tait E, Valenti P, Saunders RD, Billaud A, Pachter L, Klapper R, Janning W, Glover DM, Ashburner M, Bellen HJ, Jäckle H, Schäfer U EMBO Rep. 2002;3;34-8. PMID: 11751581 |
| Microbial genomics. Dynamic duos. Sebaihia M, Thomson N, Holden M, Parkhill J Trends Microbiol. 2001;9;579. PMID: 11728863 |
| Secondary DNA structure analysis of the coding strand switch regions of five Leishmania major Friedlin chromosomes. Tosato V, Ciarloni L, Ivens AC, Rajandream MA, Barrell BG, Bruschi CV Curr Genet. 2001;40;186-94. PMID: 11727994 |
| Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18. Parkhill J, Dougan G, James KD, Thomson NR, Pickard D, Wain J, Churcher C, Mungall KL, Bentley SD, Holden MT, Sebaihia M, Baker S, Basham D, Brooks K, Chillingworth T, Connerton P, Cronin A, Davis P, Davies RM, Dowd L, White N, Farrar J, Feltwell T, Hamlin N, Haque A, Hien TT, Holroyd S, Jagels K, Krogh A, Larsen TS, Leather S, Moule S, O'Gaora P, Parry C, Quail M, Rutherford K, Simmonds M, Skelton J, Stevens K, Whitehead S, Barrell BG Nature. 2001;413;848-52. PMID: 11677608 |
| Parasites are GO. Berriman M, Aslett M, Hall N, Ivens A Trends Parasitol. 2001;17;463-4. PMID: 11642257 |
| Back in the limelight. Holden M, Parkhill J Trends Microbiol. 2001;9;467. PMID: 11597430 |
| Whole genome comparison of Campylobacter jejuni human isolates using a low-cost microarray reveals extensive genetic diversity. Dorrell N, Mangan JA, Laing KG, Hinds J, Linton D, Al-Ghusein H, Barrell BG, Parkhill J, Stoker NG, Karlyshev AV, Butcher PD, Wren BW Genome Res. 2001;11;1706-15. PMID: 11591647 |
| Genome sequence of Yersinia pestis, the causative agent of plague. Parkhill J, Wren BW, Thomson NR, Titball RW, Holden MT, Prentice MB, Sebaihia M, James KD, Churcher C, Mungall KL, Baker S, Basham D, Bentley SD, Brooks K, Cerdeño-Tárraga AM, Chillingworth T, Cronin A, Davies RM, Davis P, Dougan G, Feltwell T, Hamlin N, Holroyd S, Jagels K, Karlyshev AV, Leather S, Moule S, Oyston PC, Quail M, Rutherford K, Simmonds M, Skelton J, Stevens K, Whitehead S, Barrell BG Nature. 2001;413;523-7. PMID: 11586360 |
| The full monty. Thomson N, Holden M, Sebaihia M, Cerdeño-Tárraga A, Parkhill J Trends Microbiol. 2001;9;411-2. PMID: 11553433 |
| Analysis of 41 kb of the DNA sequence from the right arm of chromosome II of Schizosaccharomyces pombe. Sánchez M, Revuelta JL, del Rey F, Gwilliam R, Skelton J, Churcher C, Rajandream MA, Wood V, Barrell B, Lyne R, Reinhardt R, Borzym K, Beck A, Moreno S, Domínguez A Yeast. 2001;18;1111-6. PMID: 11536333 |
| Size matters? Thomson N, Sebaihia M, Holden M, Cerdeño-Tárraga A, Parkhill J Trends Microbiol. 2001;9;359. PMID: 11514197 |
| Genomics of Mycobacterium bovis. Gordon SV, Eiglmeier K, Garnier T, Brosch R, Parkhill J, Barrell B, Cole ST, Hewinson RG Tuberculosis (Edinb). 2001;81;157-63. PMID: 11463237 |
| Of staphs, streps and other things. Sebaihia M, Cerdeño-Tárraga A, Thomson N, Parkhill J Trends Microbiol. 2001;9;309. PMID: 11435083 |
| From first base: the sequence of the tip of the X chromosome of Drosophila melanogaster, a comparison of two sequencing strategies. Benos PV, Gatt MK, Murphy L, Harris D, Barrell B, Ferraz C, Vidal S, Brun C, Demaille J, Cadieu E, Dreano S, Gloux S, Lelaure V, Mottier S, Galibert F, Borkova D, Miñana B, Kafatos FC, Bolshakov S, Sidén-Kiamos I, Papagiannakis G, Spanos L, Louis C, Madueño E, de Pablos B, Modolell J, Peter A, Schöttler P, Werner M, Mourkioti F, Beinert N, Dowe G, Schäfer U, Jäckle H, Bucheton A, Callister D, Campbell L, Henderson NS, McMillan PJ, Salles C, Tait E, Valenti P, Saunders RD, Billaud A, Pachter L, Glover DM, Ashburner M Genome Res. 2001;11;710-30. PMID: 11337470 |
| The failure of different strains of Yersinia pestis to produce lipopolysaccharide O-antigen under different growth conditions is due to mutations in the O-antigen gene cluster. Prior JL, Parkhill J, Hitchen PG, Mungall KL, Stevens K, Morris HR, Reason AJ, Oyston PC, Dell A, Wren BW, Titball RW FEMS Microbiol Lett. 2001;197;229-33. PMID: 11313139 |
| A superfamily of variant genes encoded in the subtelomeric region of Plasmodium vivax. del Portillo HA, Fernandez-Becerra C, Bowman S, Oliver K, Preuss M, Sanchez CP, Schneider NK, Villalobos JM, Rajandream MA, Harris D, Pereira da Silva LH, Barrell B, Lanzer M Nature. 2001;410;839-42. PMID: 11298455 |
| Salmonella enterica serovar Typhi possesses a unique repertoire of fimbrial gene sequences. Townsend SM, Kramer NE, Edwards R, Baker S, Hamlin N, Simmonds M, Stevens K, Maloy S, Parkhill J, Dougan G, Bäumler AJ Infect Immun. 2001;69;2894-901. PMID: 11292704 |
| Yersinia pestis pFra shows biovar-specific differences and recent common ancestry with a Salmonella enterica serovar Typhi plasmid. Prentice MB, James KD, Parkhill J, Baker SG, Stevens K, Simmonds MN, Mungall KL, Churcher C, Oyston PC, Titball RW, Wren BW, Wain J, Pickard D, Hien TT, Farrar JJ, Dougan G J Bacteriol. 2001;183;2586-94. PMID: 11274119 |
| Massive gene decay in the leprosy bacillus. Cole ST, Eiglmeier K, Parkhill J, James KD, Thomson NR, Wheeler PR, Honoré N, Garnier T, Churcher C, Harris D, Mungall K, Basham D, Brown D, Chillingworth T, Connor R, Davies RM, Devlin K, Duthoy S, Feltwell T, Fraser A, Hamlin N, Holroyd S, Hornsby T, Jagels K, Lacroix C, Maclean J, Moule S, Murphy L, Oliver K, Quail MA, Rajandream MA, Rutherford KM, Rutter S, Seeger K, Simon S, Simmonds M, Skelton J, Squares R, Squares S, Stevens K, Taylor K, Whitehead S, Woodward JR, Barrell BG Nature. 2001;409;1007-11. PMID: 11234002 |
| Subtelomeric sequence from the right arm of Schizosaccharomyces pombe chromosome I contains seven permease genes. Hunt C, Moore K, Xiang Z, Hurst SM, McDougall RC, Rajandream MA, Barrell BG, Gwilliam R, Wood V, Lyne MH, Aves SJ Yeast. 2001;18;355-61. PMID: 11223945 |
| Dinucleotide repeat polymorphism in the interleukin-10 gene promoter (IL-10.G) and genetic susceptibility to early-onset periodontal disease. Hennig BJ, Parkhill JM, Chapple IL, Heasman PA, Taylor JJ Genes Immun. 2000;1;402-4. PMID: 11196688 |
| An annotator's view. Parkhill J Microbiology. 2001;147;2. PMID: 11160794 |
| Comparison of the Escherichia coli K-12 genome with sampled genomes of a Klebsiella pneumoniae and three salmonella enterica serovars, Typhimurium, Typhi and Paratyphi. McClelland M, Florea L, Sanderson K, Clifton SW, Parkhill J, Churcher C, Dougan G, Wilson RK, Miller W Nucleic Acids Res. 2000;28;4974-86. PMID: 11121489 |
| Artemis: sequence visualization and annotation. Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA, Barrell B Bioinformatics. 2000;16;944-5. PMID: 11120685 |
| Prevalence of small inversions in yeast gene order evolution. Seoighe C, Federspiel N, Jones T, Hansen N, Bivolarovic V, Surzycki R, Tamse R, Komp C, Huizar L, Davis RW, Scherer S, Tait E, Shaw DJ, Harris D, Murphy L, Oliver K, Taylor K, Rajandream MA, Barrell BG, Wolfe KH Proc Natl Acad Sci U S A. 2000;97;14433-7. PMID: 11087826 |
| Analysis of 114 kb of DNA sequence from fission yeast chromosome 2 immediately centromere-distal to his5. Xiang Z, Moore K, Wood V, Rajandream MA, Barrell BG, Skelton J, Churcher CM, Lyne MH, Devlin K, Gwilliam R, Rutherford KM, Aves SJ Yeast. 2000;16;1405-11. PMID: 11054821 |
| Association of interleukin-1 gene polymorphisms with early-onset periodontitis. Parkhill JM, Hennig BJ, Chapple IL, Heasman PA, Taylor JJ J Clin Periodontol. 2000;27;682-9. PMID: 10983602 |
| Current awareness on yeast. Xiang Z, Wood V, Rajandream MA, Barrell BG, Moore K, Hunt C, Aves SJ Yeast. 2000;16;1069-76. PMID: 10923029 |
| The mating-type region of Schizosaccharomyces pombe h(-S) 972: sequencing and analysis of 69 kb including the expressed mat1 locus. Xiang Z, Wood V, Rajandream MA, Barrell BG, Moore K, Hunt C, Aves SJ Yeast. 2000;16;1061-7. PMID: 10923028 |
| In defense of complete genomes. Parkhill J Nat Biotechnol. 2000;18;493-4. PMID: 10802612 |
| Complete DNA sequence of a serogroup A strain of Neisseria meningitidis Z2491. Parkhill J, Achtman M, James KD, Bentley SD, Churcher C, Klee SR, Morelli G, Basham D, Brown D, Chillingworth T, Davies RM, Davis P, Devlin K, Feltwell T, Hamlin N, Holroyd S, Jagels K, Leather S, Moule S, Mungall K, Quail MA, Rajandream MA, Rutherford KM, Simmonds M, Skelton J, Whitehead S, Spratt BG, Barrell BG Nature. 2000;404;502-6. PMID: 10761919 |
| The three-dimensional structure of a Plasmodium falciparum cyclophilin in complex with the potent anti-malarial cyclosporin A. Peterson MR, Hall DR, Berriman M, Nunes JA, Leonard GA, Fairlamb AH, Hunter WN J Mol Biol. 2000;298;123-33. PMID: 10756109 |
| From sequence to chromosome: the tip of the X chromosome of D. melanogaster. Benos PV, Gatt MK, Ashburner M, Murphy L, Harris D, Barrell B, Ferraz C, Vidal S, Brun C, Demailles J, Cadieu E, Dreano S, Gloux S, Lelaure V, Mottier S, Galibert F, Borkova D, Minana B, Kafatos FC, Louis C, Sidén-Kiamos I, Bolshakov S, Papagiannakis G, Spanos L, Cox S, Madueño E, de Pablos B, Modolell J, Peter A, Schöttler P, Werner M, Mourkioti F, Beinert N, Dowe G, Schäfer U, Jäckle H, Bucheton A, Callister DM, Campbell LA, Darlamitsou A, Henderson NS, McMillan PJ, Salles C, Tait EA, Valenti P, Saunder RD, Glover DM Science. 2000;287;2220-2. PMID: 10731137 |
| Analysis of the proteome of Mycobacterium tuberculosis in silico. Tekaia F, Gordon SV, Garnier T, Brosch R, Barrell BG, Cole ST Tuber Lung Dis. 1999;79;329-42. PMID: 10694977 |
| The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences. Parkhill J, Wren BW, Mungall K, Ketley JM, Churcher C, Basham D, Chillingworth T, Davies RM, Feltwell T, Holroyd S, Jagels K, Karlyshev AV, Moule S, Pallen MJ, Penn CW, Quail MA, Rajandream MA, Rutherford KM, van Vliet AH, Whitehead S, Barrell BG Nature. 2000;403;665-8. PMID: 10688204 |
| 'Going wrong with confidence': misleading sequence analyses of CiaB and clpX. Pallen M, Wren B, Parkhill J Mol Microbiol. 1999;34;195. PMID: 10540297 |
| The complete nucleotide sequence of chromosome 3 of Plasmodium falciparum. Bowman S, Lawson D, Basham D, Brown D, Chillingworth T, Churcher CM, Craig A, Davies RM, Devlin K, Feltwell T, Gentles S, Gwilliam R, Hamlin N, Harris D, Holroyd S, Hornsby T, Horrocks P, Jagels K, Jassal B, Kyes S, McLean J, Moule S, Mungall K, Murphy L, Barrell BG Nature. 1999;400;532-8. PMID: 10448855 |
| Genetic basis for lipopolysaccharide O-antigen biosynthesis in bordetellae. Preston A, Allen AG, Cadisch J, Thomas R, Stevens K, Churcher CM, Badcock KL, Parkhill J, Barrell B, Maskell DJ Infect Immun. 1999;67;3763-7. PMID: 10417135 |
| DNA sequencing and analysis of a 67.4 kb region from the right arm of Schizosaccharomyces pombe chromosome II reveals 28 open reading frames including the genes his5, pol5, ppa2, rip1, rpb8 and skb1. Xiang Z, Lyne MH, Wood V, Rajandream MA, Barrell BG, Aves SJ Yeast. 1999;15;893-901. PMID: 10407269 |
| Crystal structure of Trypanosoma cruzi trypanothione reductase in complex with trypanothione, and the structure-based discovery of new natural product inhibitors. Bond CS, Zhang Y, Berriman M, Cunningham ML, Fairlamb AH, Hunter WN Structure Fold Des. 1999;7;81-9. PMID: 10368274 |
| Characterization of protein Ser/Thr phosphatases of the malaria parasite, Plasmodium falciparum: inhibition of the parasitic calcineurin by cyclophilin-cyclosporin complex. Dobson S, May T, Berriman M, Del Vecchio C, Fairlamb AH, Chakrabarti D, Barik S Mol Biochem Parasitol. 1999;99;167-81. PMID: 10340482 |
| New insertion sequences and a novel repeated sequence in the genome of Mycobacterium tuberculosis H37Rv. Gordon SV, Heym B, Parkhill J, Barrell B, Cole ST Microbiology. 1999;145 ( Pt 4);881-92. PMID: 10220167 |
| Analysis of the genome of Mycobacterium tuberculosis H37Rv. Cole ST, Barrell BG Novartis Found Symp. 1998;217;160-72; discussion 172-7. PMID: 9949807 |
| Detailed characterization of a cyclophilin from the human malaria parasite Plasmodium falciparum. Berriman M, Fairlamb AH Biochem J. 1998;334 ( Pt 2);437-45. PMID: 9716503 |
| Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Cole ST, Brosch R, Parkhill J, Garnier T, Churcher C, Harris D, Gordon SV, Eiglmeier K, Gas S, Barry CE, Tekaia F, Badcock K, Basham D, Brown D, Chillingworth T, Connor R, Davies R, Devlin K, Feltwell T, Gentles S, Hamlin N, Holroyd S, Hornsby T, Jagels K, Krogh A, McLean J, Moule S, Murphy L, Oliver K, Osborne J, Quail MA, Rajandream MA, Rogers J, Rutter S, Seeger K, Skelton J, Squares R, Squares S, Sulston JE, Taylor K, Whitehead S, Barrell BG Nature. 1998;393;537-44. PMID: 9634230 DOI: 10.1038/31159 |
| Use of a Mycobacterium tuberculosis H37Rv bacterial artificial chromosome library for genome mapping, sequencing, and comparative genomics. Brosch R, Gordon SV, Billault A, Garnier T, Eiglmeier K, Soravito C, Barrell BG, Cole ST Infect Immun. 1998;66;2221-9. PMID: 9573111 |
| The nucleotide sequence of Saccharomyces cerevisiae chromosome XVI. Bussey H, Storms RK, Ahmed A, Albermann K, Allen E, Ansorge W, Araujo R, Aparicio A, Barrell B, Badcock K, Benes V, Botstein D, Bowman S, Brückner M, Carpenter J, Cherry JM, Chung E, Churcher C, Coster F, Davis K, Davis RW, Dietrich FS, Delius H, DiPaolo T, Hani J Nature. 1997;387;103-5. PMID: 9169875 |
| The nucleotide sequence of Saccharomyces cerevisiae chromosome XIII. Bowman S, Churcher C, Badcock K, Brown D, Chillingworth T, Connor R, Dedman K, Devlin K, Gentles S, Hamlin N, Hunt S, Jagels K, Lye G, Moule S, Odell C, Pearson D, Rajandream M, Rice P, Skelton J, Walsh S, Whitehead S, Barrell B Nature. 1997;387;90-3. PMID: 9169872 |
| The nucleotide sequence of Saccharomyces cerevisiae chromosome IX. Churcher C, Bowman S, Badcock K, Bankier A, Brown D, Chillingworth T, Connor R, Devlin K, Gentles S, Hamlin N, Harris D, Horsnell T, Hunt S, Jagels K, Jones M, Lye G, Moule S, Odell C, Pearson D, Rajandream M, Rice P, Rowley N, Skelton J, Smith V, Barrell B Nature. 1997;387;84-7. PMID: 9169870 |
| Identification and characterization of a G protein-coupled receptor homolog encoded by murine cytomegalovirus. Davis-Poynter NJ, Lynch DM, Vally H, Shellam GR, Rawlinson WD, Barrell BG, Farrell HE J Virol. 1997;71;1521-9. PMID: 8995678 |
| Analysis of the complete DNA sequence of murine cytomegalovirus. Rawlinson WD, Farrell HE, Barrell BG J Virol. 1996;70;8833-49. PMID: 8971012 |
| Life with 6000 genes. Goffeau A, Barrell BG, Bussey H, Davis RW, Dujon B, Feldmann H, Galibert F, Hoheisel JD, Jacq C, Johnston M, Louis EJ, Mewes HW, Murakami Y, Philippsen P, Tettelin H, Oliver SG Science. 1996;274;546, 563-7. PMID: 8849441 |
| The Saccharomyces cerevisiae genome on the World Wide Web. Walsh S, Barrell B Trends Genet. 1996;12;276-7. PMID: 8763500 |
| Human herpesvirus 6 (strain U1102) encodes homologues of the conserved herpesvirus glycoprotein gM and the alphaherpesvirus origin-binding protein. Lawrence GL, Nicholas J, Barrell BG J Gen Virol. 1995;76 ( Pt 1);147-52. PMID: 7844524 |
| Tropomyosin is essential in yeast, yet the TPM1 and TPM2 products perform distinct functions. Drees B, Brown C, Barrell BG, Bretscher A J Cell Biol. 1995;128;383-92. PMID: 7844152 |
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