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Retrieve BLAST result
Erwinia amylovora

The Sanger Institute, funded by the USDA, has completed the sequence of the genome of Erwinia amylovora strain Ea273 in collaboration with Steven Beer of the Department of Plant Pathology, Cornell University, and Nicole Perna of the Department of Genetics, University of Wisconsin.

Erwinia amylovorais an important bacterial plant pathogen, which is the causative agent of fire blight. As a member of the Enterobacteriaceae, it is related to Escherichia and Shigella, Salmonella and Yersinia.

The genome is 3,805,874 bp in size and has a G+C content of approximately 53.5%. There are also two plasmids, one of 71,487 bp and one of 28243 bp.

The completed sequence is available for searching on our Blast Server, or for download from our FTP site.

The shotgun database is still available; there are 88,557 reads, totalling 42.322 Mb, giving a theoretical coverage of 99.99 % of the genome.

A preliminary gene prediction of the chromosome in Artemis format is now available, together with the DNA sequence in fasta format.

Statement on annotation

Annotation of the sequence is ongoing, and the full annotation will be released upon publication. Please note that, although the sequence is finished, and we believe it to be accurate, it is possible that errors and missassemblies may remain. The sequence should be considered as preliminary until final publication. We would ask users of the data to read our Data release policy and Guidelines on use of data in publications


Data Release Statement

This sequencing centre plans on publishing the completed and annotated sequences in a peer-reviewed journal as soon as possible. Permission of the principal investigator should be obtained before publishing analyses of the sequence/open reading frames/genes on a chromosome or genome scale.


Sequencing enquiries

Please address all sequencing enquiries to: parkhill@sanger.ac.uk

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Last Modified Tue Sep 30 08:57:09 2008

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