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If you want to make your own data visible within Vega or EnsEMBL, you can add it via a DAS track that's visible either to just you or anyone else, your choice. You can find documentation on this at http://www.ensembl.org/das/. If you need further help please contact us (email@example.com). Please also note that DAS tracks are dependent on the underlying sequence, meaning that if this sequence changes (e.g. new assembly, new tiling path), you will have to re-map your data.