Contact WTSI Webmaster Printer friendly format Login to WTSI resources WTSI RSS feed
All Sequencing
  • Human (HGP)
  • Pathogens
  • Blast
  • B. marinus
  • Overview
  • Blast search
  • Sequence FTP
  • Artemis

  • Microbes Home
  • Website Search
  • People Search
  • Library Services
  • Site Map
  • Feedback / Help
Retrieve BLAST result
Bacteriovorax marinus

The Sanger Institute has been funded by the Wellcome Trust to sequence the genome of Bacteriovorax marinus strain SJ in collaboration with Dr. O. Colin Stine of the Department of Epidemiology, University of Maryland, Baltimore, Dr. Henry N. Williams and Dr. Silvia Piņeiro of the School of Dentistry, University of Maryland, Baltimore, and Dr. Casonya Johnson of the Department of Biology, Morgan State University, Baltimore.

Bacteriovorax marinus is a Gram negative predatory bacterium that parasitises a wide range of other Gram negative bacteria.

The sequence is now finished, and is available for searching on our Blast Server.

The shotgun data, finished sequences and initial gene prediction with assigned systematic gene identifiers are available for download from our FTP site.

It consists of a chromsome of 3,435,933 bp with a G+C content of 36.75 %, and a plasmid of 1,973 bp with a G+C content of 36.19 %.

The shotgun reads are still available: there are 42,363 reads totalling 29.762 Mb and giving a theoretical coverage of 99.97% of the genome.

Statement on annotation

Annotation of the sequence is ongoing, and the full annotation will be released upon publication. Please note that, although the sequence is finished, and we believe it to be accurate, it is possible that errors and missassemblies may remain. The sequence should be considered as preliminary until final publication. We would ask users of the data to read our Data release policy and Guidelines on use of data in publications


Shotgun assembly warning

Please note that the sequences in the shotgun database are single reads from ABI sequencers; they will contain errors, along with both E. coli and vector contamination.


Data Release Statement

This sequencing centre plans on publishing the completed and annotated sequences in a peer-reviewed journal as soon as possible. Permission of the principal investigator should be obtained before publishing analyses of the sequence/open reading frames/genes on a chromosome or genome scale.


Sequencing enquiries

Please address all sequencing enquiries to: parkhill@sanger.ac.uk

Information Projects Other Services
Sanger Home
Sitemap
Site Search
Information
Careers
Press
News
Seminars
Workshops
Publications
Staff Theses
Travel Directions
Research Teams
Research Faculty
Personnel Search
Human Genetics
Model Organism Genetics
Pathogen Genetics
Bioinformatics
Sequencing
Library
Helpdesk
Webmail
VPN Access
Sign In
SSO Pass. Reset

webmaster@sanger.ac.uk

Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK  Tel:+44 (0)1223 834244

Last Modified Wed Feb 2 10:27:32 2005

Genome Research Limited is a charity registered in England with number 1021457

Data Sharing Policy | Conditions of Use | Copyright