SSAHA2: Sequence Search and Alignment by Hashing Algorithm.
SSAHA2 (Sequence Search and Alignment by Hashing Algorithm) is a pairwise sequence alignment program designed for the efficient mapping of sequencing reads onto genomic reference sequences.
Detailed instructions can be found at
If you like SSAHA2 also check out the related software SMALT which is more accurate, efficient and simpler to use.
Copyright (C) 2001 – 2015 Genome Research Ltd.
Authors: Adam Spargo, Hannes Ponstingl and Zemin Ning
SSAHA2 is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation, either version 3 of the License, or (at your
option) any later version.
This program is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program. If not, see <http://www.gnu.org/licenses/>.
If you need help or have any queries, please contact us using the details below.
For more information, please contact:
Zemin Ning ( firstname.lastname@example.org ) or
Adam Spargo ( email@example.com ) or
Hannes Ponstingl ( firstname.lastname@example.org )