GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Schizophrenia

The human homologues of the following genes have been identified in "Schizophrenia" studies:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
ADAM23 (1 of 2) ADAM23 ENSDARG00000074197 1 Not determined 1
ANK3 (2 of 2) ANK3 ENSDARG00000061736 13 Not determined 6
as3mt AS3MT ENSDARG00000027572 None Not determined 3
B8JLI4_DANRE FBXO11 ENSDARG00000061631 6 Not determined 1
brd1 BRD1 ENSDARG00000013596 1 Not determined 2
brp44 BRP44 ENSDARG00000024478 None Not determined 1
BTNL2 BTN2A2 ENSDARG00000093039 1 Not determined 1
BTNL2 BTN3A2 ENSDARG00000093039 1 Not determined 1
BTNL2 BTN3A1 ENSDARG00000093039 1 Not determined 1
cacna1c CACNA1C ENSDARG00000008398 7 1 phenotype 7
CACNA1C CACNA1C ENSDARG00000037904 3 Not determined 7
cacna1i CACNA1I ENSDARG00000070522 6 Not determined 2
ceacam1 CEACAM21 ENSDARG00000041119 2 Not determined 2
cmklr1 CMKLR1 ENSDARG00000090890 3 Not determined 3
cnnm2a CNNM2 ENSDARG00000061195 2 Not determined 9
cnnm2b CNNM2 ENSDARG00000078733 1 Not determined 9
cntnap2 CNTNAP5 ENSDARG00000074558 1 Not determined 4
cntnap5 CNTNAP5 ENSDARG00000073802 8 Not determined 4
CSMD1 CSMD1 ENSDARG00000058353 3 Not determined 12
ctdp1 CTDP1 ENSDARG00000017522 5 Not determined 1
cxcl12a CXCL12 ENSDARG00000037116 2 Not determined 4
cxcl12b CXCL12 ENSDARG00000055100 4 Not determined 4
cxcr3.1 CEACAM21 ENSDARG00000078177 None Not determined 2
dcaf6 DCAF6 ENSDARG00000078311 4 Not determined 1
DLC1 DLC1 ENSDARG00000079317 1 Normal 2
dpyd DPYD ENSDARG00000010267 1 Not determined 3
DPYD (4 of 5) DPYD ENSDARG00000086853 None Not determined 3
DPYD (3 of 5) DPYD ENSDARG00000086464 None Not determined 3
DPYD (2 of 5) DPYD ENSDARG00000089675 1 Not determined 3
E2J8V4_DANRE TCF4 ENSDARG00000087652 None Not determined 9
exoc2 EXOC2 ENSDARG00000055610 1 Not determined 5
fbxo11 FBXO11 ENSDARG00000059973 1 Not determined 1
fez1 FEZ1 ENSDARG00000023174 None Not determined 2
fxr1 FXR1 ENSDARG00000022968 2 Not determined 1
gpr1 GPR1 ENSDARG00000063704 2 Not determined 1
GRIK3 GRIK3 ENSDARG00000077715 3 Not determined 1
hhat HHAT ENSDARG00000074428 3 Not determined 1
im:7147241 SEC16B ENSDARG00000052046 8 Not determined 5
im:7149628 MSRA ENSDARG00000055270 1 Not determined 6
irf2bp2a IRF2BP2 ENSDARG00000004702 2 Not determined 3
irf2bp2b IRF2BP2 ENSDARG00000006275 2 Not determined 3
itm1 STT3A ENSDARG00000053832 2 Not determined 2
kcnmb2 KCNMB2 ENSDARG00000006568 None Not determined 3
KIF26B KIF26B ENSDARG00000013343 5 Not determined 1
LOC100007362 PCDH20 ENSDARG00000036424 2 Not determined 4
LOC100151487 NLRC5 ENSDARG00000088423 1 Not determined 2
LOC100333695 NLRC5 ENSDARG00000090946 2 Not determined 2
LOC100334409 CNTNAP5 ENSDARG00000074351 None Not determined 4
LOC555586 FTSJ2 ENSDARG00000075368 None Not determined 1
LOC559157 CNTNAP5 ENSDARG00000058969 4 Not determined 4
LOC564761 ITIH3 ENSDARG00000055053 4 Not determined 4
LOC566750 NMUR2 ENSDARG00000022570 4 Not determined 2
LOC796753 KCNMB2 ENSDARG00000001712 3 Not determined 3
mad1l1 MAD1L1 ENSDARG00000033852 3 Not determined 3
mhc2dab HLA-DRB1 ENSDARG00000079105 None Not determined 35
MMP16 (3 of 3) MMP16 ENSDARG00000025111 None Not determined 4
mmp16a MMP16 ENSDARG00000088118 1 Not determined 4
mmp16b MMP16 ENSDARG00000058876 2 Not determined 4
nkapl NKAPL ENSDARG00000033450 2 Not determined 1
NLRC5 NLRC5 ENSDARG00000024631 8 Not determined 2
NP_001020335.1 ITIH4 ENSDARG00000024928 1 Not determined 4
NP_001091732.1 HLA-DRB1 ENSDARG00000071168 1 Not determined 35
NP_001155915.1 SNX8 ENSDARG00000074842 1 Not determined 1
nrgna NRGN ENSDARG00000039626 None Not determined 1
NRP1 (2 of 3) NRP1 ENSDARG00000093598 3 Normal 2
nrp1a NRP1 ENSDARG00000071865 5 Normal 2
nrp1b NRP1 ENSDARG00000027290 2 Not determined 2
nsd1a WHSC1L1 ENSDARG00000060016 3 Not determined 1
nsd1b WHSC1L1 ENSDARG00000060705 5 Not determined 1
nt5c2a NT5C2 ENSDARG00000039399 3 Not determined 9
nt5c2b NT5C2 ENSDARG00000058231 2 Not determined 9
nudt1 NUDT1 ENSDARG00000030573 2 Not determined 1
pard3 PARD3 ENSDARG00000010583 10 Not determined 4
PARD3 (2 of 2) PARD3 ENSDARG00000091238 2 Not determined 4
pknox2 PKNOX2 ENSDARG00000055349 3 Normal 7
plaa PLAA ENSDARG00000042728 None Not determined 1
pom121 POM121L2 ENSDARG00000055113 2 Not determined 2
RELN (3 of 4) RELN ENSDARG00000038188 None Not determined 4
RELN (2 of 4) RELN ENSDARG00000086526 1 Not determined 4
RELN (1 of 4) RELN ENSDARG00000074198 None Not determined 4
relnl RELN ENSDARG00000077935 3 Not determined 4
ror2 ROR2 ENSDARG00000076227 2 Not determined 1
roraa RORA ENSDARG00000031768 2 Not determined 11
rorab RORA ENSDARG00000001910 2 Not determined 11
si:busm1-104n07.3 HLA-DRB1 ENSDARG00000074510 1 Normal 35
si:busm1-160c18.1 HLA-DQA1 ENSDARG00000053739 2 Not determined 27
si:busm1-160c18.3 HLA-DRB1 ENSDARG00000053738 None Not determined 35
si:busm1-160c18.3 HLA-DRB1 ENSDARG00000093706 None Not determined 35
si:busm1-194e12.11 HLA-DQA1 ENSDARG00000055441 1 Not determined 27
si:busm1-194e12.12 HLA-DRB1 ENSDARG00000055447 None Not determined 35
si:busm1-228j01.3 HLA-DQA1 ENSDARG00000086294 2 Not determined 27
si:busm1-228j01.4 HLA-DRB1 ENSDARG00000088872 2 Not determined 35
si:busm1-228j01.5 HLA-DQA1 ENSDARG00000079593 3 Not determined 27
si:busm1-228j01.6 HLA-DRB1 ENSDARG00000041705 1 Not determined 35
si:ch1073-403i13.1 HLA-DQA1 ENSDARG00000001832 None Not determined 27
si:ch211-107n23.1 PPFIA2 ENSDARG00000013000 3 Not determined 1
si:ch211-122m3.1 CNTNAP5 ENSDARG00000067824 7 Not determined 4
si:ch211-160l17.2 PTBP2 ENSDARG00000015901 None Not determined 3
si:ch211-214b16.4 NLRC5 ENSDARG00000093417 None Not determined 2
si:ch211-236p5.2 NLRC5 ENSDARG00000086256 1 Not determined 2
si:ch211-236p5.3 NLRC5 ENSDARG00000086418 1 Not determined 2
si:ch211-240b21.4 CMKLR1 ENSDARG00000093228 None Not determined 3
si:ch211-240b21.5 CMKLR1 ENSDARG00000092087 None Not determined 3
si:ch211-264f5.6 CEACAM21 ENSDARG00000079372 2 Not determined 2
si:ch211-278p9.1 NLRC5 ENSDARG00000087532 1 Not determined 2
si:ch211-278p9.2 NLRC5 ENSDARG00000095274 2 Not determined 2
si:ch211-278p9.3 NLRC5 ENSDARG00000094606 None Not determined 2
si:ch211-278p9.4 NLRC5 ENSDARG00000089839 None Not determined 2
si:ch211-66k16.2 NLRC5 ENSDARG00000095634 None Not determined 2
si:ch73-150k18.1 CNTNAP5 ENSDARG00000075189 10 Not determined 4
si:ch73-211l2.3 HLA-DQA1 ENSDARG00000075932 1 Not determined 27
si:ch73-233m11.2 NLRC5 ENSDARG00000091859 None Not determined 2
si:dkey-11o1.2 CEACAM21 ENSDARG00000095772 None Not determined 2
si:dkey-11o1.3 CEACAM21 ENSDARG00000093279 1 Not determined 2
si:dkey-155f10.1 CNTNAP5 ENSDARG00000073920 8 Not determined 4
si:dkey-196n19.1 NLRC5 ENSDARG00000086615 None Not determined 2
si:dkey-221h15.1 MSRA ENSDARG00000029587 3 Not determined 6
si:dkey-250k15.10 CEACAM21 ENSDARG00000092520 None Not determined 2
si:dkey-250k15.7 CEACAM21 ENSDARG00000095048 None Not determined 2
si:dkey-250k15.9 CEACAM21 ENSDARG00000095134 None Not determined 2
si:dkey-27i16.3 PCDH20 ENSDARG00000057773 9 Not determined 4
si:dkey-31n13.4 NLRC5 ENSDARG00000074202 None Not determined 2
si:dkey-58j15.9 SNX8 ENSDARG00000078057 None Not determined 1
si:dkey-69c19.1 NLRC5 ENSDARG00000089318 None Not determined 2
si:dkey-70b23.1 ARHGAP31 ENSDARG00000059472 2 Not determined 1
si:dkey-72g4.1 NKAIN2 ENSDARG00000069427 1 Not determined 3
si:dkeyp-122e7.1 ZNF804A ENSDARG00000027079 3 Not determined 3
si:dkeyp-23e4.3 DLC1 ENSDARG00000074819 4 Not determined 2
si:dkeyp-2h4.2 HLA-DQA1 ENSDARG00000031745 None Not determined 27
si:dkeyp-7g10.1 ADAMTS6 ENSDARG00000041982 2 Not determined 2
si:dkeyp-8f4.3 KIF26B ENSDARG00000024575 5 Not determined 1
si:rp71-5o12.3 NLRC5 ENSDARG00000075763 None Not determined 2
si:zfos-2070c2.1 HLA-DQA1 ENSDARG00000070206 None Not determined 27
si:zfos-2070c2.3 HLA-DRB1 ENSDARG00000076307 None Not determined 35
si:zfos-367g9.1 HLA-DQA1 ENSDARG00000074816 1 Not determined 27
SNX8 (3 of 3) SNX8 ENSDARG00000077708 1 Not determined 1
sptlc1 SPTLC1 ENSDARG00000042995 2 Not determined 1
TCF4 (1 of 2) TCF4 ENSDARG00000075546 1 Not determined 9
tmtc1 TMTC1 ENSDARG00000063149 6 Not determined 2
tspan18a TSPAN18 ENSDARG00000056656 2 Not determined 1
tspan18b TSPAN18 ENSDARG00000015015 1 Not determined 1
vrk2 VRK2 ENSDARG00000021547 1 Not determined 1
whsc1l1 WHSC1L1 ENSDARG00000062765 9 Not determined 1
wu:fd58b11 HLA-DRB1 ENSDARG00000054921 None Not determined 35
wu:fj40f01 ADAM23 ENSDARG00000062323 3 Not determined 1
zfyve28 ZFYVE28 ENSDARG00000060430 5 Not determined 1
zgc:100920 NKAIN2 ENSDARG00000042961 1 Not determined 3
zgc:101136 LSM1 ENSDARG00000043177 1 Not determined 1
zgc:103678 BRP44 ENSDARG00000037679 None Not determined 1
zgc:110377 ITIH3 ENSDARG00000055036 None Not determined 4
zgc:113074 PTBP2 ENSDARG00000015230 3 Not determined 3
zgc:123107 HLA-DQA1 ENSDARG00000020286 None Not determined 27
zgc:153067 HLA-DRB1 ENSDARG00000056330 2 Not determined 35
zgc:153372 AS3MT ENSDARG00000068967 2 Not determined 3
zgc:153505 DPYD ENSDARG00000071482 None Not determined 3
zgc:158605 PRSS16 ENSDARG00000076602 2 Not determined 2
zgc:158610 BRD1 ENSDARG00000051798 1 Not determined 2
zgc:171763 ANK3 ENSDARG00000077582 10 Not determined 6
zgc:198329 CEACAM21 ENSDARG00000076981 1 Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • 9648
  • 9648
  • ACSM1
  • ACSM1
  • ADAM
  • AGBL1
  • ATP5SL
  • BAG6
  • BUCS1
  • CCDC60
  • CCDC68
  • CENTG2
  • CLC
  • COMMD10
  • CSF2RA
  • CTD
  • El24
  • has-mir-137
  • HIST1H2AG
  • HIST1H2BJ
  • IL3RA
  • LGALS17A
  • MHC
  • MHC
  • MHC
  • MHC
  • MHC
  • MHC
  • MHC
  • MHC
  • MIR137
  • NOTCH4
  • NOTCH4
  • NOTCH4
  • other genes
  • other genes
  • other genes
  • other genes
  • PCGEM1
  • PRRC2A
  • SLC17A1
  • SLC17A3
  • SLCO6A1
  • TRIM26
  • TRIM26
  • ZDBF2
  • ZNF184
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