GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Response to antipsychotic treatment

The human homologues of the following genes have been identified in "Response to antipsychotic treatment" studies:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
anks1b ANKS1B ENSDARG00000003512 5 Not determined 7
ASTN2 (3 of 3) ASTN2 ENSDARG00000090831 None Not determined 9
ASTN2 (2 of 3) ASTN2 ENSDARG00000086640 None Not determined 9
ASTN2 (1 of 3) ASTN2 ENSDARG00000089410 1 Not determined 9
atp1a2a ATP1A2 ENSDARG00000010472 7 Not determined 1
cd40 TNFRSF11A ENSDARG00000054968 None Not determined 6
cdh5 CDH13 ENSDARG00000075549 7 Not determined 15
cntnap2 CNTNAP5 ENSDARG00000074558 1 Not determined 4
cntnap5 CNTNAP5 ENSDARG00000073802 8 Not determined 4
fign FIGN ENSDARG00000008662 None Not determined 3
FIGN (2 of 2) FIGN ENSDARG00000091716 None Not determined 3
gpr98 GPR98 ENSDARG00000021137 16 Not determined 3
GPR98 (2 of 2) GPR98 ENSDARG00000089584 None Not determined 3
KIRREL3 (2 of 3) KIRREL3 ENSDARG00000086919 None Not determined 4
kirrel3a KIRREL3 ENSDARG00000075806 3 Not determined 4
kirrel3l KIRREL3 ENSDARG00000019473 None Not determined 4
LOC100005485 ATF7IP2 ENSDARG00000089698 2 Not determined 1
LOC100331387 PRKAR2B ENSDARG00000036446 None Not determined 2
LOC100333821 TNFRSF11A ENSDARG00000087804 None Not determined 6
LOC100334409 CNTNAP5 ENSDARG00000074351 None Not determined 4
LOC559157 CNTNAP5 ENSDARG00000058969 4 Not determined 4
LOC572369 KIRREL3 ENSDARG00000060939 2 Not determined 4
LOC795858 TNFRSF11A ENSDARG00000095718 None Not determined 6
MEIS2 (2 of 2) MEIS2 ENSDARG00000091279 None Not determined 2
meis2.1 MEIS2 ENSDARG00000077840 1 Not determined 2
meis2.2 MEIS2 ENSDARG00000042361 None Not determined 2
meis3 MEIS2 ENSDARG00000002795 None Not determined 2
ngfr TNFRSF11A ENSDARG00000057143 2 Not determined 6
pde4d PDE4D ENSDARG00000032761 6 Not determined 7
ppa2 PPA2 ENSDARG00000009685 2 Not determined 2
pparda PPARD ENSDARG00000044525 1 Not determined 3
ppardb PPARD ENSDARG00000009473 3 Not determined 3
rnf144aa RNF144A ENSDARG00000020600 2 Not determined 1
rnf144ab RNF144A ENSDARG00000042557 1 Not determined 1
si:ch211-122a20.1 CDH13 ENSDARG00000014215 1 Not determined 15
si:ch211-122m3.1 CNTNAP5 ENSDARG00000067824 7 Not determined 4
si:ch211-137a8.2 CLMN ENSDARG00000068926 2 Normal 4
si:ch211-209d1.1 FHOD3 ENSDARG00000061904 3 Not determined 2
si:ch211-261n11.7 TNFRSF11A ENSDARG00000068966 None Not determined 6
si:ch211-261n11.8 TNFRSF11A ENSDARG00000089901 None Not determined 6
si:ch73-150k18.1 CNTNAP5 ENSDARG00000075189 10 Not determined 4
si:dkey-155f10.1 CNTNAP5 ENSDARG00000073920 8 Not determined 4
si:dkey-23c22.5 TNFRSF11A ENSDARG00000092892 1 Not determined 6
si:dkey-23c22.6 TNFRSF11A ENSDARG00000068991 None Not determined 6
si:dkey-23c22.7 TNFRSF11A ENSDARG00000095193 None Not determined 6
si:dkey-23c22.9 TNFRSF11A ENSDARG00000092381 None Not determined 6
si:dkey-263h23.7 FHOD3 ENSDARG00000063682 3 Not determined 2
si:dkey-33l14.1 TJP1 ENSDARG00000079374 3 Not determined 2
sox5 SOX5 ENSDARG00000011582 3 Not determined 6
spopla SPOPL ENSDARG00000010563 1 Not determined 1
spoplb SPOPL ENSDARG00000003974 None Not determined 1
tjp1 TJP1 ENSDARG00000077506 5 Not determined 2
trpm1 TRPM1 ENSDARG00000011259 10 Not determined 1
zgc:100997 CLMN ENSDARG00000043667 1 Not determined 4
zgc:153631 TNFRSF11A ENSDARG00000068993 1 Not determined 6
zgc:153759 TNFRSF11A ENSDARG00000068969 None Not determined 6
zgc:158862 TNFRSF11A ENSDARG00000068963 None Not determined 6
zgc:162329 TRPM1 ENSDARG00000061399 7 Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • LOC729993
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