GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Prostate cancer

The human homologues of the following genes have been identified in "Prostate cancer" studies:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
abcc4 ABCC4 ENSDARG00000058953 3 Not determined 4
ar AR ENSDARG00000067976 4 Not determined 5
B0S5R9_DANRE FGF10 ENSDARG00000087715 None Not determined 1
B3DJK9_DANRE FOXP4 ENSDARG00000076120 2 Not determined 1
ceacam1 CEACAM21 ENSDARG00000041119 2 Not determined 2
cldn11a CLDN11 ENSDARG00000020031 2 Not determined 1
cldn11b CLDN11 ENSDARG00000030723 1 Not determined 1
col1a1a COL1A1 ENSDARG00000012405 2 Normal 1
col1a1b COL1A1 ENSDARG00000035809 3 Not determined 1
ctbp2 CTBP2 ENSDARG00000044062 11 Not determined 1
CTBP2 CTBP2 ENSDARG00000075712 1 Not determined 1
ctdspla CTDSPL ENSDARG00000071673 1 Not determined 1
ctdsplb CTDSPL ENSDARG00000062116 1 Not determined 1
cxcr3.1 CEACAM21 ENSDARG00000078177 None Not determined 2
EHBP1 EHBP1 ENSDARG00000043643 7 Not determined 3
eif4ba EIF4B ENSDARG00000017439 None Not determined 1
eif4bb EIF4B ENSDARG00000010194 2 Not determined 1
FBN1 (1 of 2) FBN1 ENSDARG00000040013 1 Not determined 2
fbn2a FBN1 ENSDARG00000051896 13 Not determined 2
fgf10b FGF10 ENSDARG00000067548 1 Not determined 1
gprc6a GPRC6A ENSDARG00000005371 2 Not determined 2
grik1a GRIK1 ENSDARG00000069139 None Not determined 6
hapln1a HAPLN1 ENSDARG00000089769 None Not determined 3
hapln1b HAPLN1 ENSDARG00000068516 3 Not determined 3
hnf1ba HNF1B ENSDARG00000006615 1 Not determined 8
hnf1bb HNF1B ENSDARG00000022295 None Not determined 8
igf2a IGF2 ENSDARG00000018643 None Not determined 1
igf2b IGF2 ENSDARG00000033307 1 Not determined 1
igf3 IGF2 ENSDARG00000058058 None Not determined 1
im:6912374 ITGA6 ENSDARG00000056018 1 Not determined 2
ins INS ENSDARG00000035350 None Not determined 5
insb INS ENSDARG00000034610 None Not determined 5
itga3a ITGA6 ENSDARG00000037917 4 Not determined 2
itga3b ITGA6 ENSDARG00000012824 3 Not determined 2
itga6a ITGA6 ENSDARG00000042282 2 Not determined 2
itga6b ITGA6 ENSDARG00000069946 3 Not determined 2
jazf1a JAZF1 ENSDARG00000036243 1 Not determined 8
jazf1b JAZF1 ENSDARG00000056793 None Not determined 8
krt4 KRT8 ENSDARG00000017624 2 Not determined 1
krt5 KRT8 ENSDARG00000058371 4 Not determined 1
krt8 KRT8 ENSDARG00000058358 4 Not determined 1
LOC561540 GRIK1 ENSDARG00000040627 5 Not determined 6
LOC564666 LMTK2 ENSDARG00000076324 2 Not determined 1
mlpha MLPH ENSDARG00000070991 2 Not determined 1
mlphb MLPH ENSDARG00000062481 8 Not determined 1
myrip MLPH ENSDARG00000038814 5 Not determined 1
NP_001106955.1 KLF4 ENSDARG00000079922 1 Not determined 2
NP_878290.1 FGF10 ENSDARG00000030932 1 Not determined 1
nudt4a NUDT10 ENSDARG00000057767 None Not determined 2
nudt4a NUDT11 ENSDARG00000057767 None Not determined 2
nudt4b NUDT11 ENSDARG00000045878 None Not determined 2
nudt4b NUDT10 ENSDARG00000045878 None Not determined 2
pdlim5 PDLIM5 ENSDARG00000038267 3 Not determined 2
prph PRPH ENSDARG00000028306 None Not determined 1
rad23b RAD23B ENSDARG00000021550 1 Not determined 3
rfx6 RFX6 ENSDARG00000041702 4 Not determined 1
rnf181 RNF181 ENSDARG00000023958 None Not determined 1
si:ch1073-230p18.3 GGCX ENSDARG00000067805 None Not determined 1
si:ch211-106h4.9 MLPH ENSDARG00000075706 6 Not determined 1
si:ch211-264f5.6 CEACAM21 ENSDARG00000079372 2 Not determined 2
si:ch73-160p19.2 ZBTB38 ENSDARG00000077426 1 Not determined 12
si:ch73-34a12.4 FBN1 ENSDARG00000088379 None Not determined 2
si:dkey-11o1.2 CEACAM21 ENSDARG00000095772 None Not determined 2
si:dkey-11o1.3 CEACAM21 ENSDARG00000093279 1 Not determined 2
si:dkey-189e1.4 MLPH ENSDARG00000092741 1 Not determined 1
si:dkey-217f16.6 TNRC6B ENSDARG00000076389 1 Not determined 5
si:dkey-250k15.10 CEACAM21 ENSDARG00000092520 None Not determined 2
si:dkey-250k15.7 CEACAM21 ENSDARG00000095048 None Not determined 2
si:dkey-250k15.9 CEACAM21 ENSDARG00000095134 None Not determined 2
si:dkey-281i8.3 FGF10 ENSDARG00000078625 None Not determined 1
si:dkey-46g23.1 TNRC6B ENSDARG00000079723 1 Not determined 5
si:dkeyp-20g2.1 CCHCR1 ENSDARG00000092464 None Not determined 5
si:dkeyp-20g2.3 CCHCR1 ENSDARG00000093389 None Not determined 5
si:dkeyp-74a11.9 MLPH ENSDARG00000093962 1 Not determined 1
si:dkeyp-86b9.2 VAMP5 ENSDARG00000068262 None Not determined 1
skila SKIL ENSDARG00000023933 2 Normal 1
skilb SKIL ENSDARG00000022904 None Not determined 1
TENC1 (2 of 2) TENC1 ENSDARG00000068397 4 Not determined 1
tenc1a TENC1 ENSDARG00000076292 12 Not determined 1
tert TERT ENSDARG00000042637 3 Normal 18
th TH ENSDARG00000030621 2 Not determined 1
TNRC6B (1 of 3) TNRC6B ENSDARG00000074161 8 Not determined 5
vamp8 VAMP8 ENSDARG00000024116 None Not determined 1
zgc:113068 THADA ENSDARG00000053082 2 Not determined 10
zgc:123349 RAD23B ENSDARG00000058984 None Not determined 3
zgc:158846 KRT8 ENSDARG00000058462 2 Not determined 1
zgc:175176 SLC22A3 ENSDARG00000058775 1 Not determined 5
zgc:195062 C2orf43 ENSDARG00000079796 2 Not determined 1
zgc:198329 CEACAM21 ENSDARG00000076981 1 Not determined 2
zgc:56116 PDLIM5 ENSDARG00000027600 2 Not determined 2
zgc:64076 SLC22A1 ENSDARG00000030530 2 Not determined 2
znf652 ZNF652 ENSDARG00000062302 1 Not determined 5

The following reported genes could not be linked automatically to a zebrafish gene:

  • ATP5SL
  • ATP5SL
  • BIK
  • IGF2AS
  • KLK3
  • LILRA3
  • LOC340602
  • MSMB
  • MSMB
  • MSMB
  • MSMB
  • NKX3.1
  • NKX3.1
  • PKHD1
  • TCF2
  • TCF2
  • TET2
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