GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Lung cancer

The human homologues of the following genes have been identified in "Lung cancer" studies:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
A9JR91_DANRE TGM5 ENSDARG00000074155 1 Not determined 1
bat3 BAT3 ENSDARG00000075892 5 Not determined 3
bat3l BAT3 ENSDARG00000077531 2 Not determined 3
BPTF BPTF ENSDARG00000077361 8 Not determined 2
chrna5 CHRNA5 ENSDARG00000003420 3 Normal 13
chrnb2a CHRNB4 ENSDARG00000008674 3 Not determined 4
clptm1l CLPTM1L ENSDARG00000021048 None Not determined 9
dcbld1 DCBLD1 ENSDARG00000015907 4 Not determined 4
GPC5 GPC5 ENSDARG00000088858 1 Not determined 9
IL1RAP IL1RAP ENSDARG00000091088 2 Not determined 2
im:6903007 MIPEP ENSDARG00000055339 None Not determined 3
LOC100005691 DCBLD1 ENSDARG00000087892 None Not determined 4
LOC100333801 MTMR3 ENSDARG00000089046 4 Not determined 6
LOC568467 CHRNA3 ENSDARG00000054497 2 Not determined 15
LOC568566 CHRNB4 ENSDARG00000019983 2 Not determined 4
LOC569662 CHRNB4 ENSDARG00000021392 1 Not determined 4
mipep MIPEP ENSDARG00000055344 1 Not determined 3
msh5 MSH5 ENSDARG00000077479 1 Not determined 1
psma4 PSMA4 ENSDARG00000045928 None Not determined 4
rad52 RAD52 ENSDARG00000005274 2 Not determined 1
rif1 RIF1 ENSDARG00000062650 3 Not determined 1
ros1 ROS1 ENSDARG00000039893 None Not determined 2
si:ch211-234p6.10 CRP ENSDARG00000056498 None Not determined 13
si:ch211-234p6.12 CRP ENSDARG00000042613 None Not determined 13
si:ch211-234p6.13 CRP ENSDARG00000056462 None Not determined 13
si:ch211-234p6.14 CRP ENSDARG00000071454 2 Not determined 13
si:ch211-234p6.7 CRP ENSDARG00000071456 None Not determined 13
si:ch211-234p6.8 CRP ENSDARG00000071457 None Not determined 13
si:ch211-234p6.9 CRP ENSDARG00000095730 None Not determined 13
si:ch211-270n8.1 CRP ENSDARG00000045089 None Not determined 13
si:ch73-100n10.1 MTMR3 ENSDARG00000093364 2 Not determined 6
si:dkey-236e20.9 GPC5 ENSDARG00000024588 2 Not determined 9
tert TERT ENSDARG00000042637 3 Normal 18
tnfaip6 TNFAIP6 ENSDARG00000093440 None Not determined 1
tp63 TP63 ENSDARG00000044356 4 Normal 9
vti1a VTI1A ENSDARG00000045065 None Not determined 3
zgc:101049 CRP ENSDARG00000071051 1 Not determined 13
zgc:77875 MTMR3 ENSDARG00000058305 2 Not determined 6

The following reported genes could not be linked automatically to a zebrafish gene:

  • HLA class II
  • hTERT
  • LOC123688
  • LOC123688
  • LOC123688
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