GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Immune response to smallpox vaccine (IL-6)

The human homologues of the following genes have been identified in "Immune response to smallpox vaccine (IL-6)" studies:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
adora2b ADORA2B ENSDARG00000002533 1 Not determined 1
akap9 CEP110 ENSDARG00000079610 4 Not determined 1
ankle2 ANKLE2 ENSDARG00000035607 2 Not determined 1
arhgap10 ARHGAP10 ENSDARG00000078326 6 Not determined 2
auts2 AUTS2 ENSDARG00000056427 2 Not determined 5
B8A5G1_DANRE ODZ2 ENSDARG00000037122 17 Normal 4
bcas3 BCAS3 ENSDARG00000054893 2 Normal 8
bcas3 BCAS3 ENSDARG00000090764 None Not determined 8
bcdo2l BCO2 ENSDARG00000027620 2 Not determined 2
bco2a BCO2 ENSDARG00000055722 3 Not determined 2
bco2b BCO2 ENSDARG00000041715 None Not determined 2
bcr BCR ENSDARG00000079286 2 Not determined 2
bltk BLK ENSDARG00000007783 2 Not determined 11
bmp4 BMP4 ENSDARG00000019995 1 Not determined 4
cacna2d3 CACNA2D3 ENSDARG00000078760 6 Not determined 1
CACNA2D3 (2 of 2) CACNA2D3 ENSDARG00000045204 4 Not determined 1
cdc42 CDC42 ENSDARG00000044573 None Not determined 1
cdc42l CDC42 ENSDARG00000040158 None Not determined 1
cdc42l2 CDC42 ENSDARG00000057869 None Not determined 1
col1a2 COL1A2 ENSDARG00000020007 4 Not determined 4
col28a1 COL28A1 ENSDARG00000077084 3 Not determined 1
COL28A1 (2 of 2) COL28A1 ENSDARG00000087087 None Not determined 1
col4a4 COL4A4 ENSDARG00000002831 8 Not determined 1
crbn CRBN ENSDARG00000054250 1 Not determined 2
CSMD1 CSMD1 ENSDARG00000058353 3 Not determined 12
dab1a DAB1 ENSDARG00000059939 6 Not determined 3
dab1b DAB1 ENSDARG00000003290 2 Not determined 3
DAGLA DAGLA ENSDARG00000062956 2 Not determined 2
DIP2C (1 of 2) DIP2C ENSDARG00000088250 None Not determined 3
dync1i1 DYNC1I1 ENSDARG00000060948 None Not determined 2
elac1 ELAC1 ENSDARG00000045095 None Not determined 1
fev FEV ENSDARG00000009242 1 Not determined 2
fkbp6 FKBP6 ENSDARG00000030133 None Not determined 1
FKBP6 (2 of 2) FKBP6 ENSDARG00000090100 None Not determined 1
golga3 GOLGA3 ENSDARG00000062511 5 Not determined 1
gpr158 GPR158 ENSDARG00000077134 4 Not determined 1
grem2 GREM2 ENSDARG00000005001 None Not determined 2
GRIN2B (2 of 2) GRIN2B ENSDARG00000079348 3 Not determined 6
grin2bb GRIN2B ENSDARG00000030376 4 Not determined 6
il13ra2 IL5RA ENSDARG00000039436 5 Not determined 2
irak4 IRAK4 ENSDARG00000010657 1 Not determined 1
irx1a IRX1 ENSDARG00000009510 4 Not determined 1
irx7 IRX1 ENSDARG00000002601 2 Not determined 1
kcnd2 KCND2 ENSDARG00000032799 2 Not determined 2
kcnd3 KCND3 ENSDARG00000056101 3 Not determined 3
kif6 KIF6 ENSDARG00000053240 3 Not determined 3
LOC100002201 GREM2 ENSDARG00000056057 2 Not determined 2
LOC100003922 P2RY1 ENSDARG00000076845 None Not determined 1
LOC100150849 AUTS2 ENSDARG00000020946 1 Not determined 5
LOC100330946 MEX3C ENSDARG00000068971 None Not determined 2
LOC100332507 CEP110 ENSDARG00000086540 1 Not determined 1
LOC100333977 RUNX1 ENSDARG00000087646 None Not determined 3
LOC556647 GFRA3 ENSDARG00000087704 1 Not determined 1
LOC557328 TIMELESS ENSDARG00000078497 4 Not determined 1
LOC559873 RFT1 ENSDARG00000060398 None Not determined 2
LOC562072 LTBP1 ENSDARG00000056922 7 Not determined 4
LOC564761 ITIH3 ENSDARG00000055053 4 Not determined 4
LOC565651 GFRA3 ENSDARG00000074582 4 Not determined 1
LOC567172 ATP10A ENSDARG00000061039 5 Not determined 2
LOC568637 GPR158 ENSDARG00000079665 4 Not determined 1
LOC570872 TMEM173 ENSDARG00000091058 1 Not determined 1
LOC798868 DYNC1I1 ENSDARG00000022487 1 Not determined 2
lpp LPP ENSDARG00000023578 1 Not determined 10
mkxa MKX ENSDARG00000075450 1 Not determined 1
mkxb MKX ENSDARG00000075026 None Not determined 1
mnat1 MNAT1 ENSDARG00000002077 3 Not determined 1
mthfd2l MTHFD2L ENSDARG00000054199 None Not determined 1
ndufb6 NDUFB6 ENSDARG00000037259 1 Not determined 1
NGFR (2 of 3) NGFR ENSDARG00000089223 None Not determined 1
NGFR (1 of 3) NGFR ENSDARG00000088708 None Not determined 1
ngfrl NGFR ENSDARG00000032984 None Not determined 1
NP_001001831.1 PDYN ENSDARG00000079395 None Not determined 2
NP_001020335.1 ITIH4 ENSDARG00000024928 1 Not determined 4
NP_958903.1 RAB14 ENSDARG00000045261 None Not determined 1
pcdh15a PCDH15 ENSDARG00000052232 9 Normal 3
pcdh15b PCDH15 ENSDARG00000008127 5 Not determined 3
pde4d PDE4D ENSDARG00000032761 6 Not determined 7
pdyn PDYN ENSDARG00000087798 None Not determined 2
phex PHEX ENSDARG00000062363 None Not determined 3
ppp3r1a WDR92 ENSDARG00000092659 None Not determined 1
ppp3r1b WDR92 ENSDARG00000069360 1 Not determined 1
prkcq PRKCQ ENSDARG00000034173 3 Not determined 6
prr16 PRR16 ENSDARG00000075358 None Not determined 1
pus7l PUS7L ENSDARG00000069780 None Not determined 1
PUS7L (1 of 2) PUS7L ENSDARG00000090957 None Not determined 1
Q32PT0_DANRE UNC13C ENSDARG00000053220 8 Not determined 2
rab14 RAB14 ENSDARG00000074246 None Not determined 1
rab14l RAB14 ENSDARG00000035188 1 Not determined 1
rab6ba RAB6B ENSDARG00000034522 3 Not determined 1
rab6bb RAB6B ENSDARG00000031343 4 Not determined 1
rbm24a RBM24 ENSDARG00000078293 None Not determined 1
rbm24b RBM24 ENSDARG00000031809 1 Not determined 1
runx1 RUNX1 ENSDARG00000025921 None Not determined 3
sgk1 SGK1 ENSDARG00000025522 2 Not determined 2
si:ch211-12m10.1 ODZ2 ENSDARG00000011171 11 Not determined 4
si:ch211-145b13.4 TOPORS ENSDARG00000037260 7 Not determined 1
si:ch211-166i24.1 ODZ2 ENSDARG00000090676 None Not determined 4
si:ch211-195b13.1 SGK1 ENSDARG00000016623 2 Not determined 2
si:ch211-198i20.2 RASAL2 ENSDARG00000036257 1 Not determined 3
si:ch211-1c4.1 ODZ1 ENSDARG00000003403 15 Not determined 1
si:ch211-213b8.4 PCDH15 ENSDARG00000095360 None Not determined 3
si:ch211-215c3.2 ZNF827 ENSDARG00000076171 6 Not determined 4
si:ch211-220f16.2 CEP110 ENSDARG00000007976 2 Not determined 1
si:ch211-273a21.1 CNTN5 ENSDARG00000013647 3 2 normal 6
si:ch211-48m9.1 SLC4A5 ENSDARG00000002771 4 Normal 1
si:ch211-66i11.1 DAPK1 ENSDARG00000060093 4 Not determined 2
si:dkey-161j23.4 DNAH3 ENSDARG00000068468 8 Not determined 1
si:dkey-181h23.2 DIP2C ENSDARG00000062154 3 Not determined 3
si:dkey-201l21.5 RBM24 ENSDARG00000094270 None Not determined 1
si:dkey-206f10.5 ADORA2B ENSDARG00000088165 None Not determined 1
si:dkey-225n3.4 PTCHD1 ENSDARG00000018066 4 Not determined 1
si:dkey-240h12.4 DAPK1 ENSDARG00000034210 4 Not determined 2
si:dkey-25e12.6 MTHFD2L ENSDARG00000091891 3 Not determined 1
si:dkey-7l6.7 DIP2C ENSDARG00000025513 2 Not determined 3
si:dkey-91m11.5 BCR ENSDARG00000042329 8 Not determined 2
si:dkeyp-2c8.2 TMTC2 ENSDARG00000035273 2 Not determined 3
slc15a1a SLC15A1 ENSDARG00000077192 1 Normal 1
slc15a1b SLC15A1 ENSDARG00000044528 2 Not determined 1
slc4a5 SLC4A5 ENSDARG00000005966 7 Not determined 1
snx18a SNX18 ENSDARG00000067713 1 Not determined 1
snx18b SNX18 ENSDARG00000044246 2 Not determined 1
SPIRE1 (2 of 3) SPIRE1 ENSDARG00000038445 2 Not determined 1
SPIRE1 (1 of 3) SPIRE1 ENSDARG00000086693 1 Not determined 1
spock3 SPOCK3 ENSDARG00000070266 3 Not determined 2
supv3l1 SUPV3L1 ENSDARG00000077728 None Not determined 1
tmem110 TMEM110 ENSDARG00000013694 None Not determined 2
tmtc2 TMTC2 ENSDARG00000045753 5 Not determined 3
tomm20b TOMM20 ENSDARG00000044636 None Not determined 3
TOPORS (2 of 2) TOPORS ENSDARG00000039784 1 Not determined 1
unc13c UNC13C ENSDARG00000069731 None Not determined 2
UNC13C (3 of 4) UNC13C ENSDARG00000087946 1 Not determined 2
UNC13C (1 of 4) UNC13C ENSDARG00000087669 None Not determined 2
vps26a VPS26A ENSDARG00000056549 None Not determined 2
wdr92 WDR92 ENSDARG00000037334 None Not determined 1
zdhhc8a ANKLE2 ENSDARG00000042872 4 Not determined 1
zgc:110377 ITIH3 ENSDARG00000055036 None Not determined 4
zgc:114123 SPIRE1 ENSDARG00000044956 None Not determined 1
zgc:153436 SPIRE1 ENSDARG00000035868 2 Not determined 1
zgc:154065 SGK1 ENSDARG00000006598 None Not determined 2
zgc:154074 ATP8A1 ENSDARG00000063001 2 Not determined 1
zgc:171814 GFRA3 ENSDARG00000056651 4 Not determined 1
zgc:172136 FRMD1 ENSDARG00000078741 None Not determined 1
zgc:193699 TRIM50 ENSDARG00000057550 1 Not determined 1
zgc:55318 CNTN5 ENSDARG00000021584 3 Not determined 6
zgc:55468 FAM108C1 ENSDARG00000058452 None Not determined 1
zgc:55886 UBE2D2 ENSDARG00000043484 2 Normal 1
zgc:56340 UBE2D2 ENSDARG00000038473 None Not determined 1
zgc:56368 TRIM50 ENSDARG00000056678 1 Not determined 1
zgc:63637 RAB6B ENSDARG00000029885 1 Not determined 1
zgc:92757 RAB10 ENSDARG00000046106 1 Not determined 2
zhx2 ZHX2 ENSDARG00000055162 2 Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • ATP5GP2
  • C2orf83
  • C6orf190
  • CAMKMT
  • CYMP
  • CYP2C8
  • CYP2C9
  • DCHS2
  • ECSM2
  • EPGN
  • FLJ44385
  • FLJ45139
  • GAPDHL19
  • hCG_1820717
  • LOC100128151
  • LOC100128265
  • LOC100129027
  • LOC100129594
  • LOC100129725
  • LOC100129730
  • LOC100131236
  • LOC100131805
  • LOC100131899
  • LOC100132612
  • LOC100132631
  • LOC151300
  • LOC152118
  • LOC341604
  • LOC344332
  • LOC387761
  • LOC388460
  • LOC388460
  • LOC389936
  • LOC392008
  • LOC441996
  • LOC647132
  • LOC654254
  • LOC728241
  • LOC728727
  • LOC729968
  • MAMLD1
  • MDS1
  • NLRP13
  • NLRP8
  • OR2H1
  • SLC6A20
  • VENTXP5
  • XKR4
Short-link