GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

HIV-1 control

The human homologues of the following genes have been identified in "HIV-1 control" studies:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
BTNL2 BTNL2 ENSDARG00000093039 1 Not determined 18
DDR1 DDR1 ENSDARG00000078523 None Not determined 1
GPC5 GPC5 ENSDARG00000088858 1 Not determined 9
hcrtr2 HCRTR2 ENSDARG00000023722 1 Normal 1
LOC100333576 MCM8 ENSDARG00000074326 2 Not determined 4
ppp3cca PPP3CC ENSDARG00000014962 4 Not determined 1
ppp3ccb PPP3CC ENSDARG00000057456 None Not determined 1
si:ch211-239f4.1 EVI5L ENSDARG00000052766 6 Not determined 1
si:dkey-236e20.9 GPC5 ENSDARG00000024588 2 Not determined 9
sorbs3 SORBS3 ENSDARG00000037476 3 Not determined 1
tnxb TNXB ENSDARG00000001760 5 Not determined 4
vars2 VARS2 ENSDARG00000056717 5 Not determined 2
znrd1 ZNRD1 ENSDARG00000036070 None Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • AC023798.16
  • AOAH
  • C6orf12
  • CDSN
  • DPCR1
  • HCP5
  • HCP5
  • HLA-A
  • HLA-B
  • HLA-B
  • HLA-B
  • HLA-B
  • HLA-B
  • HLA-B
  • HLA-C
  • HLA-C
  • HLA-C
  • MICA
  • NOTCH4
  • PSORS1C3
  • RNF39
  • RP11-100A16.1
  • SNORD52
  • TRIM10
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