GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Hippocampal atrophy

The human homologues of the following genes have been identified in "Hippocampal atrophy" studies:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
apoeb APOE ENSDARG00000040295 1 Not determined 42
arid2 ARID2 ENSDARG00000007413 3 Not determined 1
ARSB ARSB ENSDARG00000093887 None Not determined 2
cand1 CAND1 ENSDARG00000017841 3 Not determined 1
CHD6 CHD6 ENSDARG00000017244 6 Not determined 1
col18a1 COL18A1 ENSDARG00000036558 1 Not determined 1
efna5a EFNA5 ENSDARG00000089790 None Not determined 2
efna5b EFNA5 ENSDARG00000057223 1 Not determined 2
f5 F5 ENSDARG00000055705 8 Not determined 7
frmd6 FRMD6 ENSDARG00000002332 2 Not determined 4
ikzf1 IKZF1 ENSDARG00000013539 4 Not determined 10
lhfp LHFP ENSDARG00000004363 None Not determined 1
lhfpl2 LHFPL2 ENSDARG00000039926 None Not determined 1
magi2 MAGI2 ENSDARG00000021590 7 Not determined 4
MAGI2 (2 of 3) MAGI2 ENSDARG00000089764 None Not determined 4
MAGI2 (1 of 3) MAGI2 ENSDARG00000073769 1 Not determined 4
mettl8 METTL8 ENSDARG00000017359 1 Not determined 1
NP_001017562.1 LHFPL2 ENSDARG00000071509 None Not determined 1
rpn2 RPN2 ENSDARG00000009724 None Not determined 1
si:ch211-157c18.2 MAGI2 ENSDARG00000025108 4 Not determined 4
si:ch211-260g14.4 SELP ENSDARG00000042138 5 Not determined 4
si:ch211-260g14.8 SELP ENSDARG00000009123 4 Not determined 4
si:ch211-66g24.1 MAGI2 ENSDARG00000077633 3 Not determined 4
si:ch73-116b16.2 SLC1A7 ENSDARG00000026248 None Not determined 2
si:dkey-267i17.5 PRUNE2 ENSDARG00000059423 1 Not determined 1
slc1a7a SLC1A7 ENSDARG00000034940 1 Not determined 2
slc1a8a SLC1A7 ENSDARG00000034628 2 Not determined 2
slc1a8b SLC1A7 ENSDARG00000032465 None Not determined 2
ttc27 TTC27 ENSDARG00000007918 1 Not determined 1
zgc:110064 APOE ENSDARG00000086370 1 Not determined 42
zgc:77456 LHFPL2 ENSDARG00000009653 None Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • C20orf132
  • FDPSP
  • GCFC2
  • MAL2
  • RP11-232A1.1
  • S100A5
  • SCAMP1
  • SFRS2IP
  • TLE1
  • ZBP1
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