GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Diabetic retinopathy

The human homologues of the following genes have been identified in "Diabetic retinopathy " studies:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
A1L144_DANRE MPRIP ENSDARG00000063698 None Not determined 2
akt3 AKT3 ENSDARG00000087205 None Not determined 2
ARHGAP22 (2 of 2) ARHGAP22 ENSDARG00000076434 None Not determined 2
B8A5G1_DANRE ODZ2 ENSDARG00000037122 17 Normal 4
ccnl1 CCNL1 ENSDARG00000012140 1 Not determined 4
E2J8V4_DANRE TCF4 ENSDARG00000087652 None Not determined 9
hs6st3 HS6ST3 ENSDARG00000069500 1 Not determined 1
igsf21a IGSF21 ENSDARG00000031049 5 Not determined 2
igsf21b IGSF21 ENSDARG00000056084 2 Not determined 2
insra INSR ENSDARG00000011948 3 Normal 6
insrb INSR ENSDARG00000071524 3 Not determined 6
irf8 IRF8 ENSDARG00000056407 None Not determined 9
kcnk1 KCNK1 ENSDARG00000045067 None Not determined 2
LEKR1 LEKR1 ENSDARG00000091468 2 Not determined 4
LOC100335008 GRAMD3 ENSDARG00000088075 1 Not determined 2
LOC792524 HS6ST3 ENSDARG00000071217 None Not determined 1
mysm1 MYSM1 ENSDARG00000034693 5 Not determined 1
MYT1L (2 of 2) MYT1L ENSDARG00000006212 3 Normal 2
myt1la MYT1L ENSDARG00000008209 4 Not determined 2
NP_001139777.1 PLXDC2 ENSDARG00000059950 2 Not determined 1
NP_001184130.1 AKT3 ENSDARG00000063400 None Not determined 2
si:ch211-106h4.6 PLXDC2 ENSDARG00000077219 2 Not determined 1
si:ch211-12m10.1 ODZ2 ENSDARG00000011171 11 Not determined 4
si:ch211-166i24.1 ODZ2 ENSDARG00000090676 None Not determined 4
si:ch211-203b8.5 CCNL1 ENSDARG00000055124 None Not determined 4
si:ch211-221n23.1 ZNF238 ENSDARG00000028228 None Not determined 2
si:ch211-223a10.2 ARHGAP22 ENSDARG00000021255 3 Not determined 2
si:ch211-67f13.6 KCNK1 ENSDARG00000017254 1 Not determined 2
si:ch73-362g18.2 CREB5 ENSDARG00000070536 None Not determined 4
TCF4 (1 of 2) TCF4 ENSDARG00000075546 1 Not determined 9
veph VEPH1 ENSDARG00000031095 2 Not determined 1
wu:fi13g07 GRAMD3 ENSDARG00000091387 1 Not determined 2
zgc:194678 VSTM2B ENSDARG00000077940 1 Not determined 1
zgc:92862 MRPS15 ENSDARG00000031153 2 Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • A2BP1
  • C1orf102
  • CCDC68
  • KIAA1804
  • KLHDC7A
  • KRT18P34
  • LOC100128283
  • LOC100128567
  • LOC100130551
  • LOC100131080
  • LOC100131165
  • LOC100131413
  • LOC401317
  • LOC441114
  • LOC7029897
  • LOC729200
  • LOC730070
  • LOC732275
  • LSCM10
  • MAP3K7IP2
  • tcag7.873
  • TNFRSF13B
  • TNFSF4
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