GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Colorectal cancer

The human homologues of the following genes have been identified in "Colorectal cancer" studies:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
atf1 ATF1 ENSDARG00000044301 None Not determined 2
bmp2a BMP2 ENSDARG00000013409 None Not determined 7
bmp2b BMP2 ENSDARG00000041430 1 Not determined 7
bmp4 BMP4 ENSDARG00000019995 1 Not determined 4
ccnd2a CCND2 ENSDARG00000051748 None Not determined 7
ccnd2b CCND2 ENSDARG00000070408 None Not determined 7
cdh1 CDH1 ENSDARG00000024371 1 Not determined 2
cdh5 CDH1 ENSDARG00000075549 7 Not determined 2
cdkn1a CDKN1A ENSDARG00000076554 None Not determined 4
cdkn1c CDKN1A ENSDARG00000010878 1 Not determined 4
dcbld1 DCBLD1 ENSDARG00000015907 4 Not determined 4
dip2ba DIP2B ENSDARG00000005350 4 Not determined 1
eif3ha EIF3H ENSDARG00000077242 2 Not determined 3
eif3hb EIF3H ENSDARG00000033865 None Not determined 3
fgf23 FGF23 ENSDARG00000045854 1 Not determined 2
fgf4 FGF6 ENSDARG00000068095 None Not determined 2
fgf6a FGF6 ENSDARG00000009351 1 Not determined 2
fgf6b FGF6 ENSDARG00000045856 None Not determined 2
gopc GOPC ENSDARG00000023117 None Not determined 1
grem1a GREM1 ENSDARG00000029546 None Not determined 3
hao1 HAO1 ENSDARG00000024160 2 Not determined 1
lama5 LAMA5 ENSDARG00000058543 17 Not determined 1
lamc1 LAMC1 ENSDARG00000036279 5 1 phenotype 1
LOC100004175 CDKN1A ENSDARG00000089854 None Not determined 4
LOC100005691 DCBLD1 ENSDARG00000087892 None Not determined 4
LOC100005728 GREM1 ENSDARG00000070612 None Not determined 3
LOC100334188 TBX3 ENSDARG00000061509 None Not determined 8
LOC567602 CDH1 ENSDARG00000035796 2 Not determined 2
LOC568954 DIP2B ENSDARG00000016348 6 Not determined 1
myca MYC ENSDARG00000045695 None Not determined 7
mycb MYC ENSDARG00000007241 None Not determined 7
mych MYC ENSDARG00000077473 None Not determined 7
mynn MYNN ENSDARG00000007271 4 Not determined 2
NP_001030341.1 EIF3H ENSDARG00000036116 1 Not determined 3
NP_957020.1 SCG5 ENSDARG00000077045 None Not determined 2
NP_998017.1 GREM1 ENSDARG00000090720 None Not determined 3
parp12b PARP11 ENSDARG00000057974 None Not determined 2
pitx1 PITX1 ENSDARG00000042785 None Not determined 4
PLCB1 (2 of 2) PLCB1 ENSDARG00000068594 2 Not determined 4
PLCB1 (1 of 2) PLCB1 ENSDARG00000090084 None Not determined 4
rad51ap1 RAD51AP1 ENSDARG00000045853 1 Not determined 2
rhpn2 RHPN2 ENSDARG00000014577 3 Normal 2
scg5 SCG5 ENSDARG00000032126 2 Not determined 2
SHROOM2 (2 of 2) SHROOM2 ENSDARG00000076371 3 Not determined 1
SHROOM2 (1 of 2) SHROOM2 ENSDARG00000076416 6 Normal 1
si:busm1-180o5.1 CDH1 ENSDARG00000068137 None Not determined 2
si:ch211-180b22.4 DUSP10 ENSDARG00000052465 None Not determined 1
si:ch211-214j24.1 RAD51AP1 ENSDARG00000092046 None Not determined 2
si:dkey-175m17.7 DUSP10 ENSDARG00000078317 4 Not determined 1
si:dkey-245l10.1 LAMC1 ENSDARG00000093572 None Not determined 1
si:dkey-30c15.12 CDH1 ENSDARG00000058546 None Not determined 2
si:dkey-61p9.6 HSPA12A ENSDARG00000068869 5 Not determined 1
smad7 SMAD7 ENSDARG00000016858 None Not determined 7
tbx16 TBX3 ENSDARG00000007329 None Not determined 8
tbx3 TBX3 ENSDARG00000002216 5 Normal 8
tbx6 TBX3 ENSDARG00000006939 1 Not determined 8
tigara C12orf5 ENSDARG00000051749 4 Not determined 3
tigarb C12orf5 ENSDARG00000045858 None Not determined 3
zgc:103502 CCND2 ENSDARG00000027391 None Not determined 7
zgc:112054 ATF1 ENSDARG00000033660 None Not determined 2
zgc:136471 POLD3 ENSDARG00000076169 3 Not determined 1
zgc:153612 HSPA12A ENSDARG00000070603 1 Not determined 1
zgc:175176 SLC22A3 ENSDARG00000058775 1 Not determined 5

The following reported genes could not be linked automatically to a zebrafish gene:

  • C1orf110
  • CATSPER3
  • CATSPER3
  • CRAC1
  • CRAC1
  • DQ515897
  • HMPS
  • HsG57825
  • LOC120376
  • MED13L
  • MIR4461 and H2AFY
  • MIR4461 and H2AFY
  • NABP1
  • ORF DQ515897
  • PCBD2
  • PCBD2
  • POU5FIP1
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