GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Cognitive performance

The human homologues of the following genes have been identified in "Cognitive performance" studies:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
acpl2 ACPL2 ENSDARG00000040644 None Not determined 2
acss1 ACSS1 ENSDARG00000044142 1 Not determined 1
api5 API5 ENSDARG00000033597 1 Not determined 1
atl1 ATL1 ENSDARG00000060481 3 Not determined 1
bach2 BACH2 ENSDARG00000004074 2 Not determined 14
btbd11a BTBD11 ENSDARG00000063255 3 Normal 1
btbd11b BTBD11 ENSDARG00000063040 8 Not determined 1
capn5a CAPN5 ENSDARG00000069717 None Not determined 1
capn5b CAPN5 ENSDARG00000069748 1 Not determined 1
cdkl1 CDKL1 ENSDARG00000017329 2 Not determined 1
coro2ba CORO2B ENSDARG00000079440 3 Not determined 1
coro2bb CORO2B ENSDARG00000063604 None Not determined 1
cpvl CPVL ENSDARG00000056480 1 Not determined 2
cx28.1 GJA5 ENSDARG00000041792 1 Not determined 1
cx28.9 GJA5 ENSDARG00000041797 None Not determined 1
cx32.2 GJA5 ENSDARG00000076789 3 Not determined 1
cx32.3 GJA5 ENSDARG00000041787 None Not determined 1
cx34.5 GJA5 ENSDARG00000069411 1 Not determined 1
cx41.8 GJA5 ENSDARG00000069450 2 Not determined 1
cx45.6 GJA5 ENSDARG00000040065 1 Not determined 1
dnajc15 DNAJC15 ENSDARG00000038309 1 Not determined 1
dsel DSEL ENSDARG00000061461 1 Not determined 2
ehhadh EHHADH ENSDARG00000070029 2 Normal 2
fam131c FAM131C ENSDARG00000037320 1 Not determined 1
FAM177B FAM177B ENSDARG00000086748 None Not determined 1
fam91a1 FAM91A1 ENSDARG00000003320 1 Not determined 2
FAT4 FAT4 ENSDARG00000045665 6 Normal 2
flt1 FLT1 ENSDARG00000019371 8 Normal 2
GABRB3 GABRB3 ENSDARG00000023771 3 Not determined 2
gorasp2 GORASP2 ENSDARG00000015126 1 Not determined 1
grik4 GRIK4 ENSDARG00000026753 9 Not determined 1
GRIN2B (2 of 2) GRIN2B ENSDARG00000079348 3 Not determined 6
grin2bb GRIN2B ENSDARG00000030376 4 Not determined 6
gtf2e2 GTF2E2 ENSDARG00000012672 1 Not determined 1
hccs HCCS ENSDARG00000003051 None Not determined 1
hccsa HCCS ENSDARG00000028131 1 Not determined 1
hccsal HCCS ENSDARG00000095776 1 Not determined 1
ids IDS ENSDARG00000071699 1 Not determined 1
immp2l IMMP2L ENSDARG00000004925 1 Not determined 1
jam2a JAM2 ENSDARG00000058996 2 Not determined 1
jam2b JAM2 ENSDARG00000079071 1 Not determined 1
jun JUN ENSDARG00000043531 None Not determined 1
kcnb2 KCNB2 ENSDARG00000038862 1 Not determined 4
lipc LIPC ENSDARG00000053476 2 Not determined 24
LIPC (2 of 2) LIPC ENSDARG00000090486 None Not determined 24
lmo2 LMO2 ENSDARG00000091986 None Not determined 1
LOC100000804 RIMS1 ENSDARG00000089412 1 Not determined 1
LOC100003594 FAM135B ENSDARG00000079899 3 Not determined 2
LOC100329307 DSEL ENSDARG00000074504 1 Not determined 2
LOC100331644 TBC1D30 ENSDARG00000075281 None Not determined 1
LOC100334300 PHLDB2 ENSDARG00000089739 None Not determined 1
LOC100335008 GRAMD3 ENSDARG00000088075 1 Not determined 2
LOC556807 FAT4 ENSDARG00000078088 12 Not determined 2
LOC557210 BACH2 ENSDARG00000036569 4 Not determined 14
LOC566344 FBXO40 ENSDARG00000091119 None Not determined 2
LOC567369 AFAP1L2 ENSDARG00000074806 1 Not determined 1
LOC568486 RIMS1 ENSDARG00000013690 1 Not determined 1
LOC571043 SLC24A2 ENSDARG00000063158 1 Not determined 1
map4k5 MAP4K5 ENSDARG00000039125 2 Not determined 1
MCTP2 (1 of 2) MCTP2 ENSDARG00000073970 2 Not determined 5
mdm4 MDM4 ENSDARG00000057513 5 Normal 1
mthfd1 MTHFD1 ENSDARG00000040492 1 Not determined 1
ncalda NCALD ENSDARG00000070688 None Not determined 2
ncaldb NCALD ENSDARG00000011334 None Not determined 2
ncor2 NCOR2 ENSDARG00000000966 16 Normal 1
nek6 NEK6 ENSDARG00000037963 None Not determined 1
nek7 NEK6 ENSDARG00000056966 2 Not determined 1
nrip1a NRIP1 ENSDARG00000068965 6 Not determined 1
nrip1b NRIP1 ENSDARG00000068894 2 Not determined 1
parp12b PARP11 ENSDARG00000057974 None Not determined 2
pknox1.1 PKNOX1 ENSDARG00000078080 1 Not determined 3
pknox1.2 PKNOX1 ENSDARG00000036542 2 Not determined 3
PLCB1 (2 of 2) PLCB1 ENSDARG00000068594 2 Not determined 4
PLCB1 (1 of 2) PLCB1 ENSDARG00000090084 None Not determined 4
Q32PT0_DANRE UNC13C ENSDARG00000053220 8 Not determined 2
Q90VY7_DANRE PKNOX1 ENSDARG00000018765 1 Not determined 3
RBTN2_DANRE LMO2 ENSDARG00000095019 None Not determined 1
ripk2 RIPK2 ENSDARG00000033713 1 Not determined 3
sec14l1 SEC14L1 ENSDARG00000019301 1 Not determined 1
SEC14L1 (1 of 2) SEC14L1 ENSDARG00000086013 None Not determined 1
sh3gl2 SH3GL2 ENSDARG00000023600 2 Not determined 5
SH3GL2 (1 of 2) SH3GL2 ENSDARG00000039901 None Not determined 5
si:ch211-146l10.2 VPS41 ENSDARG00000063573 6 Not determined 1
si:ch211-160d20.1 CAPN5 ENSDARG00000010758 2 Not determined 1
si:ch211-207d6.2 KIAA1217 ENSDARG00000031658 2 Not determined 1
si:ch211-214d15.1 MCTP2 ENSDARG00000001414 3 Not determined 5
si:ch211-214j24.7 C6orf129 ENSDARG00000045850 None Not determined 1
si:ch211-244c8.3 PHLDB2 ENSDARG00000079889 2 Not determined 1
si:ch211-282c13.6 NIN ENSDARG00000060298 3 Not determined 1
si:ch211-285f17.1 KIAA1217 ENSDARG00000059333 3 Not determined 1
si:ch73-85k9.1 TSHZ3 ENSDARG00000087394 3 Not determined 2
si:dkey-11p10.8 PHLDB2 ENSDARG00000074843 2 Not determined 1
si:dkey-11p10.9 PLCXD2 ENSDARG00000058200 1 Not determined 1
si:dkey-14m15.1 RIMS1 ENSDARG00000074680 8 Not determined 1
si:dkey-179o14.1 RIMS1 ENSDARG00000078902 3 Not determined 1
si:dkey-192j17.1 KCNB2 ENSDARG00000088842 1 Not determined 4
si:dkey-1h6.1 MTHFD1 ENSDARG00000018266 7 Normal 1
si:dkey-220o5.5 AFAP1L2 ENSDARG00000077212 2 Not determined 1
si:dkey-22o22.2 FAT4 ENSDARG00000079247 8 Not determined 2
si:dkey-233p4.1 C6orf170 ENSDARG00000041734 5 Not determined 1
si:dkey-96n2.1 KIAA1217 ENSDARG00000092172 None Not determined 1
tal2 TAL2 ENSDARG00000042041 None Not determined 3
tnfaip8l3 TNFAIP8L3 ENSDARG00000088709 None Not determined 1
tox TOX ENSDARG00000032317 2 Not determined 3
TSHZ3 (1 of 2) TSHZ3 ENSDARG00000015959 4 Not determined 2
uchl1 UCHL1 ENSDARG00000026871 1 Not determined 1
unc13c UNC13C ENSDARG00000069731 None Not determined 2
UNC13C (3 of 4) UNC13C ENSDARG00000087946 1 Not determined 2
UNC13C (1 of 4) UNC13C ENSDARG00000087669 None Not determined 2
vangl2 VANGL2 ENSDARG00000027397 2 Not determined 1
wu:fi13g07 GRAMD3 ENSDARG00000091387 1 Not determined 2
zgc:110091 C11orf73 ENSDARG00000040546 None Not determined 1
zgc:153443 SLC24A2 ENSDARG00000042988 1 Not determined 1
zgc:153924 JUN ENSDARG00000028415 None Not determined 1
zgc:172158 FBXO40 ENSDARG00000069775 3 Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • AC007056.4-3
  • AC007402.3
  • AC007953.21
  • AC009063.8
  • AC009063.8
  • AC009117.8
  • AC010149.4
  • AC018897.4
  • AC025187.6
  • AC062028.1
  • AC067942.6-1
  • AC079779.6
  • AC090059.9
  • AC091951.3
  • AC092594.1
  • AC092725.3
  • AC093909.2
  • AC093909.2
  • AC093909.2
  • AC093909.2
  • AC103702.3
  • AC105245.4
  • AC106873.3
  • AC108171.5
  • AC131213.4
  • AC138982.2
  • AL353597.20
  • AL354896.16
  • AL358335.4
  • AL445923.10
  • ARPP-21
  • C18orf4
  • C8orf12
  • CCDC64
  • CTC-359D24.2
  • GRIP2
  • KLHL1
  • MOBP
  • RIT2
  • RNU6-1
  • RNU6-2
  • RP11-109P14.2
  • RP11-120J20.1
  • RP11-264E18.1
  • RP11-538A16.1
  • RP11-600P1.2
  • RP13-140E4.1
  • RP5-965F6.2
  • RP5-995J12.2
  • SPG3A
  • VCX3B
  • XXbac-BPG250I8.13
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