GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Breast cancer

The human homologues of the following genes have been identified in "Breast cancer" studies:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
ankrd16 ANKRD16 ENSDARG00000003822 1 Not determined 2
B0S5R9_DANRE FGF3 ENSDARG00000087715 None Not determined 2
barx2 BARX2 ENSDARG00000041098 3 Not determined 2
ccnd1 CCND1 ENSDARG00000035750 3 Not determined 2
cdkn2b CDKN2B ENSDARG00000037262 2 Not determined 30
cdkn2b CDKN2A ENSDARG00000037262 2 Not determined 25
echdc1 ECHDC1 ENSDARG00000005959 1 Not determined 1
eif2s2 EIF2S2 ENSDARG00000053047 2 Not determined 1
ERBB4 (3 of 5) ERBB4 ENSDARG00000089167 6 Not determined 2
ERBB4 (1 of 5) ERBB4 ENSDARG00000078874 1 Not determined 2
erbb4a ERBB4 ENSDARG00000063207 4 Not determined 2
erbb4b ERBB4 ENSDARG00000061142 4 Not determined 2
esr1 ESR1 ENSDARG00000004111 1 Not determined 14
fam46a FAM46A ENSDARG00000054641 None Not determined 3
fgf19 FGF19 ENSDARG00000074833 None Not determined 1
fgf3 FGF3 ENSDARG00000068094 None Not determined 2
fgfr2 FGFR2 ENSDARG00000058115 7 Not determined 10
galca GALC ENSDARG00000037064 1 Not determined 3
galcb GALC ENSDARG00000016474 3 Not determined 3
GLG1 (1 of 2) GLG1 ENSDARG00000061282 None Not determined 1
im:7162084 CCND1 ENSDARG00000019741 1 Not determined 2
LOC100004948 TNIP3 ENSDARG00000088612 1 Not determined 1
LOC100330407 GLG1 ENSDARG00000013780 1 Not determined 1
LOC100330676 FAM46A ENSDARG00000037183 1 Not determined 3
LOC100332353 MRPS30 ENSDARG00000067691 None Not determined 1
LOC100332780 ZMIZ1 ENSDARG00000076477 3 Not determined 10
LOC100334293 ERBB4 ENSDARG00000090408 2 Not determined 2
LOC562926 ABHD8 ENSDARG00000076620 1 Not determined 1
LOC799320 ZNF365 ENSDARG00000087985 1 Not determined 11
NP_001106955.1 KLF4 ENSDARG00000079922 1 Not determined 2
NP_001122273.1 ASIP ENSDARG00000077858 2 Not determined 4
oraov1 ORAOV1 ENSDARG00000074700 None Not determined 1
rad23b RAD23B ENSDARG00000021550 1 Not determined 3
rad51l1 RAD51L1 ENSDARG00000037046 4 Not determined 7
raly RALY ENSDARG00000059972 None Not determined 1
rnf146 RNF146 ENSDARG00000089981 2 Not determined 2
ropn1l ROPN1L ENSDARG00000058370 None Not determined 2
si:ch211-241j12.3 ACTL7A ENSDARG00000043963 1 Not determined 1
si:dkey-117i6.1 TOX3 ENSDARG00000073957 3 Not determined 8
si:dkey-22l11.2 FBXO18 ENSDARG00000062983 3 Not determined 1
si:dkey-281i8.3 FGF3 ENSDARG00000078625 None Not determined 2
si:rp71-80a19.2 MAP3K1 ENSDARG00000088180 None Not determined 5
siah2l SIAH2 ENSDARG00000044381 1 Not determined 1
SLC4A7 SLC4A7 ENSDARG00000073952 4 Not determined 4
tab2 TAB2 ENSDARG00000021509 3 Not determined 2
tert TERT ENSDARG00000042637 3 Normal 18
tmem45b TMEM45B ENSDARG00000056239 1 Not determined 3
zgc:100909 C19orf62 ENSDARG00000077526 1 Not determined 2
zgc:103502 CCND1 ENSDARG00000027391 None Not determined 2
zgc:123349 RAD23B ENSDARG00000058984 None Not determined 3
zgc:158635 SLC45A1 ENSDARG00000004302 3 Not determined 2
zgc:158867 C6orf97 ENSDARG00000016161 1 Not determined 8
zgc:163093 MRPS30 ENSDARG00000075326 1 Not determined 1
zgc:172283 ABHD8 ENSDARG00000079719 None Not determined 1
zgc:85936 ANKLE1 ENSDARG00000087529 1 Not determined 2
zmiz1 ZMIZ1 ENSDARG00000074502 10 Not determined 10

The following reported genes could not be linked automatically to a zebrafish gene:

  • C6orf37
  • FGF4
  • LOC643714
  • LSP1
  • LSP1
  • MYEOV
  • TNRC9
  • TNRC9
  • ZNF577
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