GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Bone mineral density

The human homologues of the following genes have been identified in "Bone mineral density" studies:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
abcf2 ABCF2 ENSDARG00000038785 1 Not determined 2
ABCF2 (2 of 2) ABCF2 ENSDARG00000052331 None Not determined 2
adamts18 ADAMTS18 ENSDARG00000001999 4 Not determined 2
arhgap1 ARHGAP1 ENSDARG00000024324 1 Not determined 2
axin1 AXIN1 ENSDARG00000026534 1 Not determined 1
B7TLZ1_DANRE KCNMA1 ENSDARG00000060237 None Not determined 3
cbr1 CBR3 ENSDARG00000036587 None Not determined 1
cbr1l CBR3 ENSDARG00000021149 1 Not determined 1
cd40 TNFRSF11A ENSDARG00000054968 None Not determined 6
cdkal1 CDKAL1 ENSDARG00000022122 2 Not determined 23
col11a1a COL11A1 ENSDARG00000026165 7 Not determined 3
col11a1b COL11A1 ENSDARG00000009014 7 Not determined 3
cpn1 CPN1 ENSDARG00000005185 1 Not determined 4
ctnnb1 CTNNB1 ENSDARG00000014571 1 Not determined 2
CTNNB1 CTNNB1 ENSDARG00000023472 2 Not determined 2
cylda CYLD ENSDARG00000060058 4 Not determined 3
dhh DHH ENSDARG00000037062 None Not determined 1
erc1a ERC1 ENSDARG00000009941 3 Not determined 1
erc1b ERC1 ENSDARG00000031930 5 Not determined 1
esr1 ESR1 ENSDARG00000004111 1 Not determined 14
FMN2 (2 of 2) FMN2 ENSDARG00000023318 1 Not determined 2
fmn2b FMN2 ENSDARG00000061778 None Not determined 2
foxl1 FOXL1 ENSDARG00000008133 1 Not determined 3
GALNT3 GALNT3 ENSDARG00000063724 None Not determined 2
gpatch1 GPATCH1 ENSDARG00000033418 3 Not determined 1
grb10a GRB10 ENSDARG00000002013 3 Normal 3
hbl1 MBL2 ENSDARG00000068221 None Not determined 2
hbl2 MBL2 ENSDARG00000094681 1 Not determined 2
hbl3 MBL2 ENSDARG00000068220 1 Not determined 2
hbl4 MBL2 ENSDARG00000054202 None Not determined 2
hoxc6a HOXC6 ENSDARG00000070343 1 Not determined 1
hoxc6b HOXC6 ENSDARG00000046045 1 Not determined 1
idua IDUA ENSDARG00000062904 3 Not determined 1
il21r IL21R ENSDARG00000069961 1 Not determined 1
il21rl IL21R ENSDARG00000078649 1 Not determined 1
insig2 INSIG2 ENSDARG00000037203 None Not determined 1
jag1a JAG1 ENSDARG00000030289 5 Normal 5
jag1b JAG1 ENSDARG00000013168 3 Not determined 5
KIAA2018 KIAA2018 ENSDARG00000077431 4 Not determined 1
LEKR1 LEKR1 ENSDARG00000091468 2 Not determined 4
lin7c LIN7C ENSDARG00000027322 1 Not determined 1
LOC100000500 SOST ENSDARG00000061259 None Not determined 2
LOC100329924 SCYL1 ENSDARG00000009017 1 Not determined 2
LOC100331628 TNFSF11 ENSDARG00000068141 1 Not determined 3
LOC100332741 ERC1 ENSDARG00000076014 1 Not determined 1
LOC100333117 CYLD ENSDARG00000068386 1 Not determined 3
LOC100333821 TNFRSF11A ENSDARG00000087804 None Not determined 6
LOC558595 AKAP11 ENSDARG00000075435 4 Normal 2
LOC565173 RPS6KA5 ENSDARG00000060551 6 Not determined 1
LOC565254 PKDCC ENSDARG00000038235 4 Not determined 1
LOC795858 TNFRSF11A ENSDARG00000095718 None Not determined 6
lrp5 LRP5 ENSDARG00000006921 6 Not determined 3
MAPT (2 of 2) MAPT ENSDARG00000087616 3 Not determined 11
mapta MAPT ENSDARG00000089314 2 Not determined 11
mark3 MARK3 ENSDARG00000019345 5 Not determined 1
MARK3 (1 of 3) MARK3 ENSDARG00000077873 None Not determined 1
mef2ca MEF2C ENSDARG00000029764 4 Not determined 8
mef2cb MEF2C ENSDARG00000009418 1 Not determined 8
mpp7 MPP7 ENSDARG00000008366 None Not determined 4
MPP7 (3 of 3) MPP7 ENSDARG00000025168 None Not determined 4
MPP7 (2 of 3) MPP7 ENSDARG00000041883 None Not determined 4
ngfr TNFRSF11A ENSDARG00000057143 2 Not determined 6
NTAN1 NTAN1 ENSDARG00000079495 1 Not determined 2
Q502M3_DANRE SPTBN1 ENSDARG00000036402 6 Not determined 5
rerea RERE ENSDARG00000077353 8 Not determined 4
rereb RERE ENSDARG00000075670 4 Not determined 4
rtdr1 RTDR1 ENSDARG00000017983 2 1 phenotype, 1 normal 2
sall1a SALL1 ENSDARG00000074319 3 Not determined 3
sall1b SALL1 ENSDARG00000075891 3 Not determined 3
si:ch211-105d11.2 C18orf19 ENSDARG00000035985 None Not determined 1
si:ch211-149m3.3 GRB10 ENSDARG00000035308 8 Not determined 3
si:ch211-152m4.1 C7orf58 ENSDARG00000045747 2 Not determined 2
si:ch211-160m22.1 ANAPC1 ENSDARG00000075687 3 Not determined 2
si:ch211-234f20.7 KLHDC5 ENSDARG00000006011 None Not determined 2
si:ch211-239i4.3 PKDCC ENSDARG00000035161 2 Not determined 1
si:ch211-261n11.7 TNFRSF11A ENSDARG00000068966 None Not determined 6
si:ch211-261n11.8 TNFRSF11A ENSDARG00000089901 None Not determined 6
si:ch211-39f22.2 KCNMA1 ENSDARG00000079840 6 Not determined 3
si:ch211-69e5.1 JAG1 ENSDARG00000079519 4 Not determined 5
si:dkey-19f21.3 DNM3 ENSDARG00000032238 3 Not determined 6
si:dkey-23c22.5 TNFRSF11A ENSDARG00000092892 1 Not determined 6
si:dkey-23c22.6 TNFRSF11A ENSDARG00000068991 None Not determined 6
si:dkey-23c22.7 TNFRSF11A ENSDARG00000095193 None Not determined 6
si:dkey-23c22.9 TNFRSF11A ENSDARG00000092381 None Not determined 6
slc25a13 SLC25A13 ENSDARG00000070172 3 Not determined 1
smg6 SMG6 ENSDARG00000075957 2 Not determined 5
sox4a SOX4 ENSDARG00000004588 None Not determined 2
sox4b SOX4 ENSDARG00000043235 1 Not determined 2
sox6 SOX6 ENSDARG00000015536 5 Not determined 5
sp7 SP7 ENSDARG00000019516 2 Not determined 3
SPTBN1 (1 of 2) SPTBN1 ENSDARG00000079113 4 Not determined 5
stard3nl STARD3NL ENSDARG00000045421 None Not determined 4
supt3h SUPT3H ENSDARG00000002776 3 Not determined 7
TGFBR3 TGFBR3 ENSDARG00000078670 2 Not determined 4
wls WLS ENSDARG00000009534 2 Not determined 1
wnt16 WNT16 ENSDARG00000094973 None Not determined 3
wnt4a WNT4 ENSDARG00000071208 1 Not determined 6
wnt4b WNT4 ENSDARG00000040159 None Not determined 6
wu:fk36e11 SCYL1 ENSDARG00000079854 None Not determined 2
xkr9 XKR9 ENSDARG00000026500 None Not determined 1
ZBTB40 ZBTB40 ENSDARG00000091762 6 Not determined 5
zgc:100789 BET1L ENSDARG00000032037 None Not determined 4
zgc:101566 C12orf23 ENSDARG00000086342 None Not determined 1
zgc:101598 FUBP3 ENSDARG00000087058 1 Not determined 3
zgc:113036 C18orf19 ENSDARG00000040186 None Not determined 1
zgc:153631 TNFRSF11A ENSDARG00000068993 1 Not determined 6
zgc:153675 C12orf23 ENSDARG00000071555 None Not determined 1
zgc:153725 MARK3 ENSDARG00000026630 1 Not determined 1
zgc:153759 TNFRSF11A ENSDARG00000068969 None Not determined 6
zgc:158862 TNFRSF11A ENSDARG00000068963 None Not determined 6
zgc:158867 C6orf97 ENSDARG00000016161 1 Not determined 8
zgc:162040 RSPO3 ENSDARG00000070081 1 Not determined 7
zgc:64098 C12orf23 ENSDARG00000030465 None Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • C16orf38
  • C17orf53
  • DCDC5
  • IBSP
  • LOC285735
  • MEPE
  • PKIA
  • PTH
  • RANKL
  • RANKL
  • SOX9
  • TNFRSF11B
  • TNFRSF11B
  • TNFRSF11B
  • TNFRSF11B
  • TXNDC3
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