GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Alzheimer's disease

The human homologues of the following genes have been identified in "Alzheimer's disease" studies:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
apoeb APOE ENSDARG00000040295 1 Not determined 42
bin1 BIN1 ENSDARG00000058820 3 Not determined 6
clu CLU ENSDARG00000010434 None Not determined 5
DIP2C (1 of 2) DIP2C ENSDARG00000088250 None Not determined 3
disc1 DISC1 ENSDARG00000021895 8 Not determined 5
im:7149628 MSRA ENSDARG00000055270 1 Not determined 6
im:7159195 VSNL1 ENSDARG00000044053 None Not determined 1
LOC100000702 RIMBP2 ENSDARG00000090126 None Not determined 1
LOC560512 PVRL2 ENSDARG00000077419 None Not determined 9
LOC560816 PVRL2 ENSDARG00000062831 None Not determined 9
LOC566448 SASH1 ENSDARG00000058853 2 Not determined 3
mpp7 MPP7 ENSDARG00000008366 None Not determined 4
MPP7 (3 of 3) MPP7 ENSDARG00000025168 None Not determined 4
MPP7 (2 of 3) MPP7 ENSDARG00000041883 None Not determined 4
NP_001107902.1 SLC2A9 ENSDARG00000063288 3 1 phenotype 14
pax2a PAX2 ENSDARG00000028148 3 Not determined 1
pax2b PAX2 ENSDARG00000032578 1 Not determined 1
pcdh11x PCDH11X ENSDARG00000033556 2 Not determined 2
picalm PICALM ENSDARG00000012866 1 Not determined 5
picalml PICALM ENSDARG00000014137 2 Not determined 5
poln POLN ENSDARG00000092043 1 Not determined 1
ppp1r3b PPP1R3B ENSDARG00000044691 None Not determined 9
pvrl2l PVRL2 ENSDARG00000063390 1 Not determined 9
pvrl4 PVRL2 ENSDARG00000094356 None Not determined 9
RELN (3 of 4) RELN ENSDARG00000038188 None Not determined 4
RELN (2 of 4) RELN ENSDARG00000086526 1 Not determined 4
RELN (1 of 4) RELN ENSDARG00000074198 None Not determined 4
relnl RELN ENSDARG00000077935 3 Not determined 4
rfc3 RFC3 ENSDARG00000055969 None Not determined 2
rimbp2 RIMBP2 ENSDARG00000001154 6 Not determined 1
si:ch211-141e20.2 PVRL2 ENSDARG00000093349 None Not determined 9
si:ch211-147g15.1 RIMBP2 ENSDARG00000093752 None Not determined 1
si:ch211-214p13.3 PVRL2 ENSDARG00000087403 1 Not determined 9
si:ch211-220f12.1 FRMD4A ENSDARG00000042249 4 Normal 2
si:ch211-222f23.6 PVRL2 ENSDARG00000042880 1 Not determined 9
si:ch73-138e16.6 ZNF224 ENSDARG00000074789 1 Not determined 1
si:ch73-287m6.1 RIMBP2 ENSDARG00000088977 1 Not determined 1
si:dkey-181h23.2 DIP2C ENSDARG00000062154 3 Not determined 3
si:dkey-1d7.1 RIMBP2 ENSDARG00000074614 2 Not determined 1
si:dkey-221h15.1 MSRA ENSDARG00000029587 3 Not determined 6
si:dkey-242g16.2 PPP1R3B ENSDARG00000069377 None Not determined 9
si:dkey-264g21.1 SASH1 ENSDARG00000007179 5 Not determined 3
si:dkey-281i8.1 PVRL2 ENSDARG00000069936 None Not determined 9
si:dkey-30j22.11 VSNL1 ENSDARG00000023228 1 Not determined 1
si:dkey-78k11.2 CR1 ENSDARG00000095512 None Not determined 5
si:dkey-7l6.7 DIP2C ENSDARG00000025513 2 Not determined 3
si:rp71-68g1.4 BIN1 ENSDARG00000042114 3 Not determined 6
slc2a11b SLC2A9 ENSDARG00000093395 2 1 phenotype 14
slc2a15a SLC2A9 ENSDARG00000029894 None Not determined 14
slc2a15b SLC2A9 ENSDARG00000053269 2 Not determined 14
slc4a1ap SLC4A1AP ENSDARG00000034160 4 Not determined 2
stk11 STK11 ENSDARG00000046074 2 Not determined 1
stk24a STK24 ENSDARG00000031413 1 Not determined 2
stk24b STK24 ENSDARG00000023878 None Not determined 2
tomm40 TOMM40 ENSDARG00000092112 1 Not determined 23
tomm40l TOMM40 ENSDARG00000036721 None Not determined 23
ttll7 TTLL7 ENSDARG00000062973 3 Not determined 2
zgc:103558 FAM113B ENSDARG00000002685 3 Not determined 1
zgc:110064 APOE ENSDARG00000086370 1 Not determined 42
zgc:110775 CR1 ENSDARG00000056075 1 Not determined 5
zgc:172302 ABCA7 ENSDARG00000074221 4 Not determined 2
zgc:77112 PPP1R3B ENSDARG00000015657 None Not determined 9

The following reported genes could not be linked automatically to a zebrafish gene:

  • AC008541.1
  • AC079250.1
  • AC110611.1
  • AP003097.1
  • APOC1
  • APOC1
  • CD33
  • CNTNAP2
  • FLJ37543
  • MMP12
  • MMP3
  • MS4A
  • MS4A4E
  • MS4A6A
  • RP11-242G20.2
  • RP11-291J9.2
  • RP11-341A22.2
  • RP11-572M11.4
  • ZNF320
Short-link