GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
cd164 CD164 ENSDARG00000013628 None Not determined 3
CTAG2 CTAG2 ENSDARG00000086267 None Not determined 1
edil3 F8 ENSDARG00000093413 None Not determined 2
edil3b F8 ENSDARG00000060877 2 Normal 2
fam3a FAM3A ENSDARG00000070675 None Not determined 1
LMF1 LMF1 ENSDARG00000075313 2 Not determined 1
mecp2 MECP2 ENSDARG00000014218 1 Not determined 1
mfge8a F8 ENSDARG00000015349 None Not determined 2
mfge8b F8 ENSDARG00000045803 2 Not determined 2
mhc1uba HFE ENSDARG00000075963 None Not determined 20
mhc1ze HFE ENSDARG00000074765 None Not determined 20
mhc1zel HFE ENSDARG00000092162 1 Not determined 20
mpp1 MPP1 ENSDARG00000031475 None Not determined 2
nme4 NME4 ENSDARG00000088390 None Not determined 1
NP_919406.1 HFE ENSDARG00000086877 1 Not determined 20
polr3k POLR3K ENSDARG00000037835 1 Not determined 1
prkcea PRKCE ENSDARG00000003008 None Not determined 3
prkceb PRKCE ENSDARG00000069928 4 Not determined 3
Q8MHB3_DANRE HFE ENSDARG00000076734 None Not determined 20
Q8MHB6_DANRE HFE ENSDARG00000088022 1 Not determined 20
rhot2 RHOT2 ENSDARG00000056328 None Not determined 1
si:ch211-287j19.6 HFE ENSDARG00000001470 2 Not determined 20
si:ch211-5k11.11 NPRL3 ENSDARG00000010918 2 Not determined 3
si:ch73-213j4.4 HFE ENSDARG00000092731 None Not determined 20
si:dkey-161j23.8 ITFG3 ENSDARG00000071449 1 Not determined 2
tkt TKTL1 ENSDARG00000006019 None Not determined 1
wu:fj78b06 G6PD ENSDARG00000071065 4 Not determined 2
zgc:136614 HFE ENSDARG00000069471 None Not determined 20
zgc:162318 WDR90 ENSDARG00000079241 5 Not determined 1
zgc:162984 MPG ENSDARG00000069729 1 Not determined 1
zgc:64115 HFE ENSDARG00000036588 4 Not determined 20

The following reported genes could not be linked automatically to a zebrafish gene:

  • DECR
  • DECR
  • DECR
  • LUCL7
  • LUCL7
  • LUCL7
  • LUCL7
  • LUCL7
  • RPL2B
  • RPL2B
  • RPL2B
  • RPL2B
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