GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

APOE and BCHE as modulators of cerebral amyloid deposition: a florbetapir PET genome-wide association study.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
apoeb APOE ENSDARG00000040295 1 Not determined 42
edil3 EDIL3 ENSDARG00000093413 None Not determined 3
edil3b EDIL3 ENSDARG00000060877 2 Normal 3
efna5a EFNA5 ENSDARG00000089790 None Not determined 2
efna5b EFNA5 ENSDARG00000057223 1 Not determined 2
im:6912374 ITGA6 ENSDARG00000056018 1 Not determined 2
itga3a ITGA6 ENSDARG00000037917 4 Not determined 2
itga3b ITGA6 ENSDARG00000012824 3 Not determined 2
itga6a ITGA6 ENSDARG00000042282 2 Not determined 2
itga6b ITGA6 ENSDARG00000069946 3 Not determined 2
LOC100334697 BCHE ENSDARG00000053709 2 Not determined 5
LOC560512 PVRL2 ENSDARG00000077419 None Not determined 9
LOC560816 PVRL2 ENSDARG00000062831 None Not determined 9
LOC561496 NUAK1 ENSDARG00000028676 1 Not determined 1
pik3r1 PIK3R1 ENSDARG00000038524 3 Not determined 1
pvrl2l PVRL2 ENSDARG00000063390 1 Not determined 9
pvrl4 PVRL2 ENSDARG00000094356 None Not determined 9
si:ch211-141e20.2 PVRL2 ENSDARG00000093349 None Not determined 9
si:ch211-214p13.3 PVRL2 ENSDARG00000087403 1 Not determined 9
si:ch211-222f23.6 PVRL2 ENSDARG00000042880 1 Not determined 9
si:ch211-71n6.4 BCHE ENSDARG00000088003 None Not determined 5
si:dkey-261e22.1 NUAK1 ENSDARG00000020086 2 Not determined 1
si:dkey-27b3.5 ITGA1 ENSDARG00000074316 6 Not determined 5
si:dkey-281i8.1 PVRL2 ENSDARG00000069936 None Not determined 9
si:dkey-30c15.17 BCHE ENSDARG00000058492 1 Normal 5
si:dkey-60a16.3 ARID1B ENSDARG00000092503 2 Not determined 3
tomm40 TOMM40 ENSDARG00000092112 1 Not determined 23
tomm40l TOMM40 ENSDARG00000036721 None Not determined 23
zgc:110064 APOE ENSDARG00000086370 1 Not determined 42
zgc:73230 PIK3R1 ENSDARG00000071219 2 Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • APOC1
  • C12orf75
  • NFIB
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