GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
SH2B3 (1 of 2) SH2B3 ENSDARG00000069958 None Not determined 19
si:dkey-165i4.1 ATXN2 ENSDARG00000052897 5 Normal 10
si:dkeyp-1e8.2 SH2B3 ENSDARG00000093095 None Not determined 19

The following reported genes could not be linked automatically to a zebrafish gene:

  • HLA-A
  • HLA-A
  • HLA-A
  • HLA-A
  • HLA-B
  • HLA-B
  • HLA-B
  • HLA-B
  • HLA-B
  • HLA-C
  • HLA-C
  • HLA-C
  • HLA-C
  • MICA
  • TRIM31
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