GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association scan of dental caries in the permanent dentition.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
abcb5 ABCB5 ENSDARG00000021787 3 Not determined 2
apbb2 APBB2 ENSDARG00000061880 3 Not determined 1
bmp4 BMP4 ENSDARG00000019995 1 Not determined 4
boc BOC ENSDARG00000074335 3 Not determined 1
cdkn3 CDKN3 ENSDARG00000039130 1 Not determined 2
cgrrf1 CGRRF1 ENSDARG00000037040 1 Not determined 1
cnih CNIH ENSDARG00000020311 None Not determined 1
ephx2 EPHX2 ENSDARG00000040255 5 Not determined 1
fzd1 FZD1 ENSDARG00000041464 1 Not determined 1
gmfb GMFB ENSDARG00000028327 1 Not determined 1
hoxa10b HOXA10 ENSDARG00000031337 1 Not determined 1
isl1 ISL1 ENSDARG00000004023 None Not determined 1
isl1l ISL1 ENSDARG00000021055 1 Not determined 1
lin7a LIN7A ENSDARG00000013414 1 Not determined 1
LOC555552 RHOU ENSDARG00000005626 None Not determined 5
LOC568788 ADAMTS3 ENSDARG00000060127 4 Not determined 4
LOC570917 ABRA ENSDARG00000038583 None Not determined 1
LOC571285 RPS6KA2 ENSDARG00000028469 3 Not determined 2
lzts2 LZTS1 ENSDARG00000074597 1 Not determined 3
mrpl12 SLC25A10 ENSDARG00000038768 1 Not determined 1
pabpc1l RBMS3 ENSDARG00000002597 3 Not determined 3
PTK2B (1 of 2) PTK2B ENSDARG00000022841 4 Not determined 1
ptk2bb PTK2B ENSDARG00000039577 4 Not determined 1
rbms3 RBMS3 ENSDARG00000044574 1 Not determined 3
rhoua RHOU ENSDARG00000019709 4 Not determined 5
rhoub RHOU ENSDARG00000012968 None Not determined 5
scn1a SCN9A ENSDARG00000010783 6 Normal 1
scn1lab SCN9A ENSDARG00000062744 6 Not determined 1
si:ch1073-210b3.1 RTEL1 ENSDARG00000034243 None Not determined 7
si:ch1073-376g14.1 ZNF804B ENSDARG00000086290 5 Not determined 4
si:ch211-119o8.6 ZNF98 ENSDARG00000026972 3 Not determined 3
si:dkey-29b11.3 ABRA ENSDARG00000087388 None Not determined 1
si:dkey-63d15.13 LZTS1 ENSDARG00000075565 2 Not determined 3
si:dkey-76a19.4 C21orf7 ENSDARG00000069143 None Not determined 1
SLC25A10 (1 of 2) SLC25A10 ENSDARG00000025074 None Not determined 1
wu:fj90d02 LZTS1 ENSDARG00000077207 None Not determined 3
zgc:92005 ABRA ENSDARG00000033854 None Not determined 1
zgc:92458 SNX7 ENSDARG00000003391 2 Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • ATP5C2
  • C18orf58
  • CHST9
  • LOC100129100
  • LOC342994
  • LOC442261
  • LOC644495
  • LOC644727
  • LOC644727
  • LOC648390
  • LOC729251
  • PAP2D
  • SIDT1
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