GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
ctdp1 CTDP1 ENSDARG00000017522 5 Not determined 1
cxcl12a CXCL12 ENSDARG00000037116 2 Not determined 4
cxcl12b CXCL12 ENSDARG00000055100 4 Not determined 4
KIF26B KIF26B ENSDARG00000013343 5 Not determined 1
LOC100007362 PCDH20 ENSDARG00000036424 2 Not determined 4
LOC100151487 NLRC5 ENSDARG00000088423 1 Not determined 2
LOC100333695 NLRC5 ENSDARG00000090946 2 Not determined 2
mhc2dab HLA-DRB1 ENSDARG00000079105 None Not determined 35
NLRC5 NLRC5 ENSDARG00000024631 8 Not determined 2
NP_001091732.1 HLA-DRB1 ENSDARG00000071168 1 Not determined 35
roraa RORA ENSDARG00000031768 2 Not determined 11
rorab RORA ENSDARG00000001910 2 Not determined 11
si:busm1-104n07.3 HLA-DRB1 ENSDARG00000074510 1 Normal 35
si:busm1-160c18.1 HLA-DQA1 ENSDARG00000053739 2 Not determined 27
si:busm1-160c18.3 HLA-DRB1 ENSDARG00000053738 None Not determined 35
si:busm1-160c18.3 HLA-DRB1 ENSDARG00000093706 None Not determined 35
si:busm1-194e12.11 HLA-DQA1 ENSDARG00000055441 1 Not determined 27
si:busm1-194e12.12 HLA-DRB1 ENSDARG00000055447 None Not determined 35
si:busm1-228j01.3 HLA-DQA1 ENSDARG00000086294 2 Not determined 27
si:busm1-228j01.4 HLA-DRB1 ENSDARG00000088872 2 Not determined 35
si:busm1-228j01.5 HLA-DQA1 ENSDARG00000079593 3 Not determined 27
si:busm1-228j01.6 HLA-DRB1 ENSDARG00000041705 1 Not determined 35
si:ch1073-403i13.1 HLA-DQA1 ENSDARG00000001832 None Not determined 27
si:ch211-214b16.4 NLRC5 ENSDARG00000093417 None Not determined 2
si:ch211-236p5.2 NLRC5 ENSDARG00000086256 1 Not determined 2
si:ch211-236p5.3 NLRC5 ENSDARG00000086418 1 Not determined 2
si:ch211-278p9.1 NLRC5 ENSDARG00000087532 1 Not determined 2
si:ch211-278p9.2 NLRC5 ENSDARG00000095274 2 Not determined 2
si:ch211-278p9.3 NLRC5 ENSDARG00000094606 None Not determined 2
si:ch211-278p9.4 NLRC5 ENSDARG00000089839 None Not determined 2
si:ch211-66k16.2 NLRC5 ENSDARG00000095634 None Not determined 2
si:ch73-211l2.3 HLA-DQA1 ENSDARG00000075932 1 Not determined 27
si:ch73-233m11.2 NLRC5 ENSDARG00000091859 None Not determined 2
si:dkey-196n19.1 NLRC5 ENSDARG00000086615 None Not determined 2
si:dkey-27i16.3 PCDH20 ENSDARG00000057773 9 Not determined 4
si:dkey-31n13.4 NLRC5 ENSDARG00000074202 None Not determined 2
si:dkey-69c19.1 NLRC5 ENSDARG00000089318 None Not determined 2
si:dkeyp-2h4.2 HLA-DQA1 ENSDARG00000031745 None Not determined 27
si:dkeyp-7g10.1 ADAMTS6 ENSDARG00000041982 2 Not determined 2
si:dkeyp-8f4.3 KIF26B ENSDARG00000024575 5 Not determined 1
si:rp71-5o12.3 NLRC5 ENSDARG00000075763 None Not determined 2
si:zfos-2070c2.1 HLA-DQA1 ENSDARG00000070206 None Not determined 27
si:zfos-2070c2.3 HLA-DRB1 ENSDARG00000076307 None Not determined 35
si:zfos-367g9.1 HLA-DQA1 ENSDARG00000074816 1 Not determined 27
wu:fd58b11 HLA-DRB1 ENSDARG00000054921 None Not determined 35
zfyve28 ZFYVE28 ENSDARG00000060430 5 Not determined 1
zgc:123107 HLA-DQA1 ENSDARG00000020286 None Not determined 27
zgc:153067 HLA-DRB1 ENSDARG00000056330 2 Not determined 35

The following reported genes could not be linked automatically to a zebrafish gene:

  • ADAM
  • CTD
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