GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
B0R0Z9_DANRE ZPLD1 ENSDARG00000063372 None Not determined 2
B0R100_DANRE ZPLD1 ENSDARG00000079119 None Not determined 2
bcam BCAM ENSDARG00000090190 1 Not determined 1
BCAM (2 of 2) BCAM ENSDARG00000070367 None Not determined 1
DCC DCC ENSDARG00000090360 5 Not determined 4
dicer1 DICER1 ENSDARG00000001129 5 Not determined 2
dnajc10 DNAJC10 ENSDARG00000074727 None Not determined 1
frzb FRZB ENSDARG00000018383 None Not determined 1
itgbl1 ITGBL1 ENSDARG00000040985 2 Not determined 2
LOC557734 LRP8 ENSDARG00000070074 5 Not determined 1
LOC560512 PVRL2 ENSDARG00000077419 None Not determined 9
LOC560816 PVRL2 ENSDARG00000062831 None Not determined 9
LOC562872 ZPLD1 ENSDARG00000086272 2 Not determined 2
LOC567816 ZPLD1 ENSDARG00000062319 1 Normal 2
LOC797951 ZNF385D ENSDARG00000086162 1 Not determined 2
MAML2 MAML2 ENSDARG00000076326 3 Not determined 5
mospd2 MOSPD2 ENSDARG00000026024 3 Not determined 1
ntrk2a NTRK2 ENSDARG00000095706 5 Not determined 1
ntrk2b NTRK2 ENSDARG00000059645 5 Normal 1
ntrk3a NTRK2 ENSDARG00000059897 10 Not determined 1
pip5k1b PIP5K1B ENSDARG00000044295 3 Not determined 2
pou3f3a POU3F1 ENSDARG00000042032 1 Not determined 3
pvrl2l PVRL2 ENSDARG00000063390 1 Not determined 9
pvrl4 PVRL2 ENSDARG00000094356 None Not determined 9
Q568B0_DANRE MGMT ENSDARG00000043275 None Not determined 2
sgk1 SGK1 ENSDARG00000025522 2 Not determined 2
si:ch211-141e20.2 PVRL2 ENSDARG00000093349 None Not determined 9
si:ch211-195b13.1 SGK1 ENSDARG00000016623 2 Not determined 2
si:ch211-214p13.3 PVRL2 ENSDARG00000087403 1 Not determined 9
si:ch211-222f23.6 PVRL2 ENSDARG00000042880 1 Not determined 9
si:ch73-270f14.4 NTRK2 ENSDARG00000074313 1 Normal 1
si:dkey-246k9.1 SPTLC3 ENSDARG00000030743 1 Not determined 4
si:dkey-258f14.3 LRP8 ENSDARG00000075974 None Not determined 1
si:dkey-281i8.1 PVRL2 ENSDARG00000069936 None Not determined 9
si:rp71-56i13.1 ZPLD1 ENSDARG00000076438 1 Not determined 2
SLC39A11 SLC39A11 ENSDARG00000089127 None Not determined 4
zgc:154065 SGK1 ENSDARG00000006598 None Not determined 2
zgc:92316 PIP5K1B ENSDARG00000006508 5 Not determined 2
ZPLD1 (1 of 2) ZPLD1 ENSDARG00000061835 1 Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • CDK4PS
  • CNTNAP
  • CNTNAP2
  • DIO3OS
  • EE F1B3
  • KCNE2
  • LOC100128373
  • LOC100128521
  • LOC100130240
  • LOC100130692
  • LOC152225
  • LOC347097
  • LOC359819
  • LOC400750
  • LOC442261
  • LOC642340
  • LOC645687
  • LOC645687
  • LOC727839
  • LOC728516
  • PA2G4P2
  • PELI2
  • PELI2
  • RPL15P2
  • RPL15P2
  • SEPT11
  • SLC28A3
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