GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Preliminary evidence of genetic determinants of adiponectin response to fenofibrate in the Genetics of Lipid Lowering Drugs and Diet Network.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
c6 C6 ENSDARG00000093052 3 Not determined 1
cdh5 CDH13 ENSDARG00000075549 7 Not determined 15
ddx54 DDX54 ENSDARG00000016015 1 Not determined 1
LOC100002134 SLC30A4 ENSDARG00000054584 1 Not determined 1
LOC100333611 SCUBE1 ENSDARG00000063097 1 Not determined 1
LOC560601 SLC24A6 ENSDARG00000086905 3 Not determined 1
LOC572407 SHANK2 ENSDARG00000061019 None Not determined 2
NP_001170916.1 TPCN1 ENSDARG00000078959 None Not determined 1
pck1 PCK1 ENSDARG00000013522 None Not determined 2
pcsk5a PCSK5 ENSDARG00000067537 7 Normal 5
pcsk5b PCSK5 ENSDARG00000060518 None Not determined 5
pmepa1 PMEPA1 ENSDARG00000039325 None Not determined 1
shank2 SHANK2 ENSDARG00000062325 5 Not determined 2
si:ch211-122a20.1 CDH13 ENSDARG00000014215 1 Not determined 15
si:ch211-22d5.4 C6 ENSDARG00000057113 5 Not determined 1
si:dkey-125i10.5 TPCN1 ENSDARG00000062362 5 Not determined 1
slc30a4 SLC30A4 ENSDARG00000007180 None Not determined 1
zgc:101011 TMEM18 ENSDARG00000036704 None Not determined 7
zgc:153957 KDM4C ENSDARG00000061504 4 Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • ENPP3
  • OAS1
  • OAS2
  • OAS3
  • ZBP1
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