GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
C3 (1 of 9) C3 ENSDARG00000090176 None Not determined 6
c3b C3 ENSDARG00000087359 8 Not determined 6
c3c C3 ENSDARG00000052207 3 Not determined 6
cfh CFH ENSDARG00000075761 3 Not determined 12
cfh CFHR1 ENSDARG00000075761 3 Not determined 2
cfh CFHR3 ENSDARG00000075761 3 Not determined 4
cfhl1 CFH ENSDARG00000056771 2 Not determined 12
cfhl1 CFHR1 ENSDARG00000056771 2 Not determined 2
cfhl1 CFHR3 ENSDARG00000056771 2 Not determined 4
cfhl2 CFH ENSDARG00000056778 4 Not determined 12
cfhl2 CFHR1 ENSDARG00000056778 4 Not determined 2
cfhl2 CFHR3 ENSDARG00000056778 4 Not determined 4
cfhl3 CFH ENSDARG00000094661 None Not determined 12
cfhl3 CFHR1 ENSDARG00000094661 None Not determined 2
cfhl3 CFHR3 ENSDARG00000094661 None Not determined 4
cfhl4 CFH ENSDARG00000094496 None Not determined 12
cfhl4 CFHR1 ENSDARG00000094496 None Not determined 2
cfhl4 CFHR3 ENSDARG00000094496 None Not determined 4
LOC100331428 C3 ENSDARG00000093198 None Not determined 6
Q5RI69_DANRE CFH ENSDARG00000094134 None Not determined 12
Q5RI69_DANRE CFHR1 ENSDARG00000094134 None Not determined 2
Q5RI69_DANRE CFHR3 ENSDARG00000094134 None Not determined 4
si:busm1-160c18.1 HLA-DRA ENSDARG00000053739 2 Not determined 21
si:busm1-194e12.11 HLA-DRA ENSDARG00000055441 1 Not determined 21
si:busm1-228j01.3 HLA-DRA ENSDARG00000086294 2 Not determined 21
si:busm1-228j01.5 HLA-DRA ENSDARG00000079593 3 Not determined 21
si:ch1073-403i13.1 HLA-DRA ENSDARG00000001832 None Not determined 21
si:ch211-140f21.1 C3 ENSDARG00000001818 6 Not determined 6
si:ch73-211l2.3 HLA-DRA ENSDARG00000075932 1 Not determined 21
si:dkey-114d20.1 CFH ENSDARG00000092786 None Not determined 12
si:dkey-114d20.1 CFHR1 ENSDARG00000092786 None Not determined 2
si:dkey-114d20.1 CFHR3 ENSDARG00000092786 None Not determined 4
si:dkey-114d20.3 CFH ENSDARG00000091868 None Not determined 12
si:dkey-114d20.3 CFHR1 ENSDARG00000091868 None Not determined 2
si:dkey-114d20.3 CFHR3 ENSDARG00000091868 None Not determined 4
si:dkey-21e7.2 C3 ENSDARG00000093068 8 Not determined 6
si:dkey-76b14.4 C3 ENSDARG00000012694 9 Normal 6
si:dkey-76b14.5 C3 ENSDARG00000053462 3 Not determined 6
si:dkeyp-2h4.2 HLA-DRA ENSDARG00000031745 None Not determined 21
si:zfos-2070c2.1 HLA-DRA ENSDARG00000070206 None Not determined 21
si:zfos-367g9.1 HLA-DRA ENSDARG00000074816 1 Not determined 21
zgc:103710 C3 ENSDARG00000043719 2 Not determined 6
zgc:123107 HLA-DRA ENSDARG00000020286 None Not determined 21

The following reported genes could not be linked automatically to a zebrafish gene:

  • C4
  • C4
  • HLA-A
  • HLA-C
  • HLA-DQB
  • HLA-DQB
  • HLA-DRB
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