GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study identifies germline polymorphisms associated with relapse of childhood acute lymphoblastic leukemia.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
magi2 MAGI2 ENSDARG00000021590 7 Not determined 4
MAGI2 (2 of 3) MAGI2 ENSDARG00000089764 None Not determined 4
MAGI2 (1 of 3) MAGI2 ENSDARG00000073769 1 Not determined 4
NPFFR1 NPFFR1 ENSDARG00000091788 1 Not determined 1
npffr1l1 NPFFR1 ENSDARG00000054203 2 Not determined 1
npffr1l2 NPFFR1 ENSDARG00000062631 1 Not determined 1
npffr1l3 NPFFR1 ENSDARG00000010712 1 Not determined 1
PDE4B (2 of 3) PDE4B ENSDARG00000087449 None Not determined 3
PDE4B (1 of 3) PDE4B ENSDARG00000032868 3 Not determined 3
pde4bb PDE4B ENSDARG00000074233 1 Not determined 3
PYGL PYGL ENSDARG00000002197 5 Not determined 1
si:ch211-157c18.2 MAGI2 ENSDARG00000025108 4 Not determined 4
si:ch211-66g24.1 MAGI2 ENSDARG00000077633 3 Not determined 4
tbxas1 TBXAS1 ENSDARG00000002249 2 Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • LOC642340
  • MYRIP
  • RIT2
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