GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
adra1ab ADRA1A ENSDARG00000027638 2 Not determined 1
ca8 CA8 ENSDARG00000039098 1 Not determined 3
ccdc146 CCDC146 ENSDARG00000004794 5 Not determined 1
cdh5 CDH13 ENSDARG00000075549 7 Not determined 15
cntnap2 CNTNAP4 ENSDARG00000074558 1 Not determined 3
FARP1 (2 of 2) FARP1 ENSDARG00000063695 1 Not determined 5
FBXL17 FBXL17 ENSDARG00000042072 None Not determined 2
fhit FHIT ENSDARG00000068850 None Not determined 9
fhit FHIT ENSDARG00000078195 None Not determined 9
kctd8 KCTD8 ENSDARG00000067507 None Not determined 2
LOC100000720 ABL1 ENSDARG00000035187 None Not determined 1
LOC100334409 CNTNAP4 ENSDARG00000074351 None Not determined 3
LOC559157 CNTNAP4 ENSDARG00000058969 4 Not determined 3
LOC567443 PTPRE ENSDARG00000015891 5 Not determined 2
LOC792904 PLBD1 ENSDARG00000076015 1 Not determined 1
LOC798498 ADRA1A ENSDARG00000028725 None Not determined 1
map2k4 MAP2K4 ENSDARG00000063583 1 Not determined 1
nedd4l NEDD4L ENSDARG00000060006 3 Not determined 3
odz3 ODZ3 ENSDARG00000005479 6 Not determined 1
PAX7 (1 of 3) PAX7 ENSDARG00000091353 3 Not determined 2
pax7a PAX7 ENSDARG00000005173 None Not determined 2
pax7b PAX7 ENSDARG00000070818 2 Not determined 2
plbd1 PLBD1 ENSDARG00000063313 None Not determined 1
ptpreb PTPRE ENSDARG00000021151 2 Not determined 2
ptprn2 PTPRN2 ENSDARG00000035970 7 Not determined 4
sc:d812 IGSF11 ENSDARG00000017217 3 Not determined 2
si:ch211-122a20.1 CDH13 ENSDARG00000014215 1 Not determined 15
si:ch211-122m3.1 CNTNAP4 ENSDARG00000067824 7 Not determined 3
si:ch211-214o10.2 MFSD9 ENSDARG00000074728 None Not determined 2
si:ch211-235f1.1 FARP1 ENSDARG00000074381 4 Not determined 5
si:ch211-268f14.2 TRAPPC9 ENSDARG00000076113 3 Not determined 2
si:ch211-46o5.1 CSMD2 ENSDARG00000001559 13 Not determined 5
si:dkey-218f9.10 TRAPPC9 ENSDARG00000094353 1 Not determined 2
si:dkey-237h12.3 ODZ3 ENSDARG00000087599 8 Not determined 1
si:dkey-53d10.1 FAM190A ENSDARG00000075919 1 Not determined 2
si:dkeyp-9c8.1 CNTLN ENSDARG00000033345 6 Not determined 2
srd5a1 SRD5A1 ENSDARG00000020509 None Not determined 2
wwox WWOX ENSDARG00000007614 4 Not determined 9
zgc:113046 ANKRD31 ENSDARG00000052731 2 Not determined 1
zgc:113068 THADA ENSDARG00000053082 2 Not determined 10
zgc:114147 TMEM106B ENSDARG00000035949 1 Not determined 3
zgc:154039 SGMS1 ENSDARG00000029621 1 Not determined 1
zgc:165604 IGSF11 ENSDARG00000021241 None Not determined 2
zgc:194486 MAP2K4 ENSDARG00000077177 None Not determined 1
zgc:64013 TMEM106B ENSDARG00000026821 None Not determined 3
zgc:91976 SGMS1 ENSDARG00000057053 None Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • KLHL1
  • NELL1
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