GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Association analyses identify three susceptibility Loci for vitiligo in the Chinese Han population.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
cdhr1 CDH23 ENSDARG00000004643 6 Not determined 1
CDHR1 (2 of 2) CDH23 ENSDARG00000044447 6 Not determined 1
CDHR2 (2 of 2) CDH23 ENSDARG00000089176 None Not determined 1
CDHR2 (1 of 2) CDH23 ENSDARG00000068586 1 Not determined 1
cdk2 CDK2 ENSDARG00000026577 2 Not determined 3
cxcr3.2 CXCR5 ENSDARG00000041041 3 Not determined 4
ddx6 DDX6 ENSDARG00000061338 4 Not determined 2
DGKA (2 of 2) DGKA ENSDARG00000002898 2 Not determined 1
erbb3a ERBB3 ENSDARG00000006202 1 Not determined 8
erbb3b ERBB3 ENSDARG00000036993 7 Not determined 8
LOC799019 CXCR5 ENSDARG00000010514 1 Not determined 4
lpp LPP ENSDARG00000023578 1 Not determined 10
NP_001038780.1 DGKA ENSDARG00000060626 5 Not determined 1
pa2g4a PA2G4 ENSDARG00000039578 1 Not determined 1
pa2g4b PA2G4 ENSDARG00000070657 2 Not determined 1
PHLDB1 (1 of 2) PHLDB1 ENSDARG00000079378 1 Not determined 4
rab5b RAB5B ENSDARG00000016059 None Not determined 3
rps26 RPS26 ENSDARG00000037071 None Not determined 2
rps26l RPS26 ENSDARG00000030408 None Not determined 2
si:dkey-252h13.1 PHLDB1 ENSDARG00000061093 3 Not determined 4
si:dkey-37h18.2 SLC29A3 ENSDARG00000077828 None Not determined 3
suox SUOX ENSDARG00000091574 None Not determined 3
treh TREH ENSDARG00000077911 2 Not determined 2
unc5b UNC5B ENSDARG00000033327 4 Normal 2
wu:fk48d07 DDX6 ENSDARG00000018425 3 Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • AK021715
  • PMEL
  • ZNFN1A4
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