GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association analysis of genetic generalized epilepsies implicates susceptibility loci at 1q43, 2p16.1, 2q22.3 and 17q21.32

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
cbx1a CBX1 ENSDARG00000004189 None Not determined 2
cbx1b CBX1 ENSDARG00000054442 None Not determined 2
cdkrap3 CDK5RAP3 ENSDARG00000045092 2 Not determined 1
chrm3a CHRM3 ENSDARG00000071091 1 Not determined 4
copz2 COPZ2 ENSDARG00000006786 2 Not determined 1
cpla2 PLA2G4A ENSDARG00000024546 2 Not determined 2
LOC100149598 CHRM3 ENSDARG00000071298 2 Not determined 4
LOC100331716 MAST4 ENSDARG00000078270 13 Not determined 2
LOC558772 NFE2L1 ENSDARG00000076533 4 Not determined 1
nfe2l1 NFE2L1 ENSDARG00000030616 1 Not determined 1
pla2g4a PLA2G4A ENSDARG00000017141 2 Not determined 2
pnpo PNPO ENSDARG00000017612 2 Not determined 1
scn1a SCN1A ENSDARG00000010783 6 Normal 1
scn1lab SCN1A ENSDARG00000062744 6 Not determined 1
si:dkey-220f10.6 SNX11 ENSDARG00000052522 1 Not determined 1
skap1 SKAP1 ENSDARG00000001498 None Not determined 2
zeb2a ZEB2 ENSDARG00000062338 3 Not determined 3
zeb2b ZEB2 ENSDARG00000078416 1 Not determined 3

The following reported genes could not be linked automatically to a zebrafish gene:

  • ATAD4
  • C1orf94
  • hsa-mir-152
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