GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association and population genetic analysis of C-reactive protein in African American and Hispanic American women.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
hnf1a HNF1A ENSDARG00000009470 None Not determined 21
hnf4a HNF4A ENSDARG00000021494 1 Not determined 8
lepr LEPR ENSDARG00000070961 5 Not determined 6
si:ch211-199m3.8 OLFML2B ENSDARG00000005716 1 Not determined 2
si:ch211-234p6.10 APCS ENSDARG00000056498 None Not determined 1
si:ch211-234p6.10 CRP ENSDARG00000056498 None Not determined 13
si:ch211-234p6.12 APCS ENSDARG00000042613 None Not determined 1
si:ch211-234p6.12 CRP ENSDARG00000042613 None Not determined 13
si:ch211-234p6.13 APCS ENSDARG00000056462 None Not determined 1
si:ch211-234p6.13 CRP ENSDARG00000056462 None Not determined 13
si:ch211-234p6.14 APCS ENSDARG00000071454 2 Not determined 1
si:ch211-234p6.14 CRP ENSDARG00000071454 2 Not determined 13
si:ch211-234p6.7 CRP ENSDARG00000071456 None Not determined 13
si:ch211-234p6.7 APCS ENSDARG00000071456 None Not determined 1
si:ch211-234p6.8 APCS ENSDARG00000071457 None Not determined 1
si:ch211-234p6.8 CRP ENSDARG00000071457 None Not determined 13
si:ch211-234p6.9 CRP ENSDARG00000095730 None Not determined 13
si:ch211-234p6.9 APCS ENSDARG00000095730 None Not determined 1
si:ch211-267e7.7 OLFML2B ENSDARG00000021480 3 Not determined 2
si:ch211-270n8.1 APCS ENSDARG00000045089 None Not determined 1
si:ch211-270n8.1 CRP ENSDARG00000045089 None Not determined 13
si:dkeyp-95d10.1 DUSP23 ENSDARG00000009844 None Not determined 2
tomm40 TOMM40 ENSDARG00000092112 1 Not determined 23
tomm40l TOMM40 ENSDARG00000036721 None Not determined 23
zgc:101049 CRP ENSDARG00000071051 1 Not determined 13
zgc:101049 APCS ENSDARG00000071051 1 Not determined 1
zgc:162025 C12orf43 ENSDARG00000046141 None Not determined 4
zgc:92902 DUSP23 ENSDARG00000089245 None Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • DARC
  • DARC
  • DARC
  • FCER1A
  • FCER1A
  • FCER1A
  • FCRL6
  • FCRL6
  • FCRL6
  • IFI16
  • IFI16
  • IFI16
  • IL1F10
  • IL1RN
  • OASL
  • OR10J1
  • OR10J1
  • OR10J1
  • OR10J3
  • OR10J3
  • OR10J3
  • OR10J5
  • OR10J5
  • OR10J5
  • TREM2
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