GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
epha3l EPHA3 ENSDARG00000039373 7 Not determined 1
irf6 IRF6 ENSDARG00000043296 2 Not determined 3
PAX7 (1 of 3) PAX7 ENSDARG00000091353 3 Not determined 2
pax7a PAX7 ENSDARG00000005173 None Not determined 2
pax7b PAX7 ENSDARG00000070818 2 Not determined 2
si:dkey-114e9.1 EPHA3 ENSDARG00000090974 1 Not determined 1
spry2 SPRY2 ENSDARG00000078308 1 Not determined 5
tpm1 TPM1 ENSDARG00000087402 1 Not determined 3
tpm3 TPM1 ENSDARG00000005162 4 Not determined 3
tpma TPM1 ENSDARG00000033683 None Not determined 3
zgc:113068 THADA ENSDARG00000053082 2 Not determined 10
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