GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study of periodontal pathogen colonization.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
B8A5G1_DANRE ODZ2 ENSDARG00000037122 17 Normal 4
CAMTA1 CAMTA1 ENSDARG00000007824 6 Not determined 2
clic5 CLIC5 ENSDARG00000070584 None Not determined 1
clic5 CLIC5 ENSDARG00000077625 None Not determined 1
CSMD3 (1 of 2) CSMD3 ENSDARG00000077905 13 Not determined 2
dab2ip DAB2IP ENSDARG00000075110 2 Not determined 3
evx2 EVX2 ENSDARG00000059255 2 Not determined 1
fos FOS ENSDARG00000031683 None Not determined 2
fzd8a FZD8 ENSDARG00000045444 7 Not determined 3
fzd8b FZD8 ENSDARG00000038569 2 Not determined 3
GLDC GLDC ENSDARG00000035120 1 Not determined 1
GRID1 (2 of 2) GRID1 ENSDARG00000044161 3 Not determined 4
HTR4 HTR4 ENSDARG00000061940 1 Not determined 5
kcnk1 KCNK1 ENSDARG00000045067 None Not determined 2
lnpa KIAA1715 ENSDARG00000063646 2 Not determined 2
lnpb KIAA1715 ENSDARG00000006639 None Not determined 2
LOC100151589 GRID1 ENSDARG00000070511 1 Not determined 4
LOC100331283 OTOF ENSDARG00000020581 6 Not determined 2
LOC570238 FOS ENSDARG00000040135 1 Not determined 2
LOC570258 JDP2 ENSDARG00000040137 None Not determined 2
LOC793756 GRID1 ENSDARG00000074583 4 Normal 4
LOC799091 FBXO38 ENSDARG00000006924 7 Not determined 1
otof OTOF ENSDARG00000030832 5 Not determined 2
pkn2 PKN2 ENSDARG00000006705 1 Not determined 3
pkn3 PKN2 ENSDARG00000079585 2 Not determined 3
Q58EF5_DANRE WAPAL ENSDARG00000044144 4 Not determined 1
runx2a RUNX2 ENSDARG00000040261 2 Not determined 2
runx2b RUNX2 ENSDARG00000059233 3 Not determined 2
si:ch211-12m10.1 ODZ2 ENSDARG00000011171 11 Not determined 4
si:ch211-153j24.3 FOS ENSDARG00000068428 2 Not determined 2
si:ch211-166i24.1 ODZ2 ENSDARG00000090676 None Not determined 4
si:ch211-232m8.6 PTTG2 ENSDARG00000075421 None Not determined 1
si:ch211-236p22.1 CSMD3 ENSDARG00000014391 3 Not determined 2
si:ch211-251b21.1 GRID1 ENSDARG00000007275 1 Not determined 4
si:ch211-272n13.3 ANKRD30A ENSDARG00000013015 3 Not determined 4
si:ch211-59d15.4 FOS ENSDARG00000092174 None Not determined 2
si:ch211-67f13.6 KCNK1 ENSDARG00000017254 1 Not determined 2
si:dkey-174n5.3 WWC1 ENSDARG00000076041 7 Not determined 1
si:dkey-192o1.2 PTTG2 ENSDARG00000090991 None Not determined 1
si:dkey-247m21.3 HTR4 ENSDARG00000001906 3 Not determined 5
si:dkey-83f4.1 DAB2IP ENSDARG00000069484 2 Not determined 3
tbc1d1 TBC1D1 ENSDARG00000062081 5 Not determined 2
tpd52l2a TPD52L3 ENSDARG00000027154 1 Not determined 1
tpd52l2b TPD52L3 ENSDARG00000013655 None Not determined 1
trps1 TRPS1 ENSDARG00000068028 3 Not determined 4
ttll11 TTLL11 ENSDARG00000060374 2 Not determined 1
UHRF2 (3 of 3) UHRF2 ENSDARG00000090666 None Not determined 1
UHRF2 (2 of 3) UHRF2 ENSDARG00000089389 None Not determined 1
UHRF2 (1 of 3) UHRF2 ENSDARG00000089654 None Not determined 1
vamp3 VAMP3 ENSDARG00000070161 1 Not determined 2
WAPAL (1 of 2) WAPAL ENSDARG00000029768 5 Not determined 1
zgc:101827 CLIC5 ENSDARG00000075993 None Not determined 1
zgc:153916 PKN2 ENSDARG00000036707 6 Not determined 3
zgc:92851 JDP2 ENSDARG00000020133 None Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • C2Orf70
  • CIB4
  • EXTLP2
  • IL33
  • KIAA1804
  • KIAA1804
  • MI346
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