GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study of antibody response to smallpox vaccine.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
ankle2 ANKLE2 ENSDARG00000035607 2 Not determined 1
bcr BCR ENSDARG00000079286 2 Not determined 2
cacna2d3 CACNA2D3 ENSDARG00000078760 6 Not determined 1
CACNA2D3 (2 of 2) CACNA2D3 ENSDARG00000045204 4 Not determined 1
crbn CRBN ENSDARG00000054250 1 Not determined 2
CSMD1 CSMD1 ENSDARG00000058353 3 Not determined 12
fev FEV ENSDARG00000009242 1 Not determined 2
golga3 GOLGA3 ENSDARG00000062511 5 Not determined 1
gpr158 GPR158 ENSDARG00000077134 4 Not determined 1
grem2 GREM2 ENSDARG00000005001 None Not determined 2
il13ra2 IL5RA ENSDARG00000039436 5 Not determined 2
irx1a IRX1 ENSDARG00000009510 4 Not determined 1
irx7 IRX1 ENSDARG00000002601 2 Not determined 1
kif6 KIF6 ENSDARG00000053240 3 Not determined 3
LOC100002201 GREM2 ENSDARG00000056057 2 Not determined 2
LOC100333977 RUNX1 ENSDARG00000087646 None Not determined 3
LOC568637 GPR158 ENSDARG00000079665 4 Not determined 1
mkxa MKX ENSDARG00000075450 1 Not determined 1
mkxb MKX ENSDARG00000075026 None Not determined 1
NP_001001831.1 PDYN ENSDARG00000079395 None Not determined 2
pcdh15a PCDH15 ENSDARG00000052232 9 Normal 3
pcdh15b PCDH15 ENSDARG00000008127 5 Not determined 3
pdyn PDYN ENSDARG00000087798 None Not determined 2
prkcq PRKCQ ENSDARG00000034173 3 Not determined 6
Q32PT0_DANRE UNC13C ENSDARG00000053220 8 Not determined 2
rbm24a RBM24 ENSDARG00000078293 None Not determined 1
rbm24b RBM24 ENSDARG00000031809 1 Not determined 1
runx1 RUNX1 ENSDARG00000025921 None Not determined 3
si:ch211-198i20.2 RASAL2 ENSDARG00000036257 1 Not determined 3
si:ch211-213b8.4 PCDH15 ENSDARG00000095360 None Not determined 3
si:dkey-201l21.5 RBM24 ENSDARG00000094270 None Not determined 1
si:dkey-91m11.5 BCR ENSDARG00000042329 8 Not determined 2
si:dkeyp-2c8.2 TMTC2 ENSDARG00000035273 2 Not determined 3
snx18a SNX18 ENSDARG00000067713 1 Not determined 1
snx18b SNX18 ENSDARG00000044246 2 Not determined 1
SPIRE1 (2 of 3) SPIRE1 ENSDARG00000038445 2 Not determined 1
SPIRE1 (1 of 3) SPIRE1 ENSDARG00000086693 1 Not determined 1
tmtc2 TMTC2 ENSDARG00000045753 5 Not determined 3
unc13c UNC13C ENSDARG00000069731 None Not determined 2
UNC13C (3 of 4) UNC13C ENSDARG00000087946 1 Not determined 2
UNC13C (1 of 4) UNC13C ENSDARG00000087669 None Not determined 2
zdhhc8a ANKLE2 ENSDARG00000042872 4 Not determined 1
zgc:114123 SPIRE1 ENSDARG00000044956 None Not determined 1
zgc:153436 SPIRE1 ENSDARG00000035868 2 Not determined 1
zgc:55468 FAM108C1 ENSDARG00000058452 None Not determined 1
zgc:92757 RAB10 ENSDARG00000046106 1 Not determined 2
zhx2 ZHX2 ENSDARG00000055162 2 Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • CYP2C8
  • CYP2C9
  • FLJ45139
  • LOC100131899
  • LOC100132612
  • LOC151300
  • LOC387761
  • LOC388460
  • LOC388460
  • LOC647132
  • LOC654254
  • VENTXP5
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