GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
A3KPZ8_DANRE CMTM8 ENSDARG00000070881 None Not determined 1
B8LFE8_DANRE NEDD9 ENSDARG00000089878 1 Not determined 1
dnajc5b DNAJC5B ENSDARG00000058147 1 Not determined 2
EPHA5 EPHA5 ENSDARG00000058284 3 Not determined 1
galnt14 GALNT14 ENSDARG00000023448 3 Not determined 1
LOC556339 PRKG2 ENSDARG00000062839 5 Not determined 4
mad2l1 MAD2L1 ENSDARG00000004713 2 Not determined 2
pc PC ENSDARG00000051939 3 Not determined 2
pcl PC ENSDARG00000000972 3 Not determined 2
prkg2 PRKG2 ENSDARG00000054741 3 Not determined 4
si:ch211-39l18.4 CYP7B1 ENSDARG00000008858 1 Normal 3
si:dkey-100g3.2 LRRC58 ENSDARG00000076773 1 Not determined 2
si:dkey-121j17.5 PRKG2 ENSDARG00000014232 6 Not determined 4
si:dkey-32o22.4 LRRC58 ENSDARG00000063509 None Not determined 2
vegfc VEGFC ENSDARG00000069640 None Not determined 1
wu:fe37d09 HIST1H4A ENSDARG00000086555 None Not determined 1
wu:fe37d09 HIST1H4A ENSDARG00000091313 None Not determined 1
wu:fe38f03 HIST1H4A ENSDARG00000074631 None Not determined 1
wu:fe38f03 HIST1H4A ENSDARG00000075366 None Not determined 1
wu:fe38f03 HIST1H4A ENSDARG00000087543 None Not determined 1
wu:fe38f03 HIST1H4A ENSDARG00000089684 None Not determined 1
wu:fe38f03 HIST1H4A ENSDARG00000090591 None Not determined 1
zgc:154043 NEDD9 ENSDARG00000058891 None Not determined 1
zgc:158657 CMTM8 ENSDARG00000063162 None Not determined 1
zgc:165555 HIST1H4A ENSDARG00000086076 None Not determined 1
zgc:165555 HIST1H4A ENSDARG00000087472 None Not determined 1
zgc:165555 HIST1H4A ENSDARG00000087670 None Not determined 1
zgc:165555 HIST1H4A ENSDARG00000089437 None Not determined 1
zgc:165555 HIST1H4A ENSDARG00000089737 None Not determined 1
zgc:165555 HIST1H4A ENSDARG00000090521 None Not determined 1
zgc:165555 HIST1H4A ENSDARG00000090941 1 Not determined 1
zgc:165555 HIST1H4A ENSDARG00000091011 None Not determined 1
zgc:165555 HIST1H4A ENSDARG00000091446 None Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • AC023950.6
  • AC087190.5-2
  • AC095058.3
  • ADAM18
  • AL391500.13
  • GLTSCR1
  • HSP90AB3P
  • IL32
  • KB-67B5.12
  • ZFP90
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