GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
CHL1 (1 of 2) CHL1 ENSDARG00000076233 6 Not determined 7
chl1a CHL1 ENSDARG00000077881 4 Not determined 7
dmd DMD ENSDARG00000008487 21 Not determined 1
dtwd1 DTWD1 ENSDARG00000059386 None Not determined 1
foxd1 FOXD2 ENSDARG00000029179 None Not determined 2
foxd2 FOXD2 ENSDARG00000058133 1 Not determined 2
lgals1l1 LGALS2 ENSDARG00000088711 None Not determined 1
lgals2a LGALS2 ENSDARG00000054942 None Not determined 1
lgals2b LGALS2 ENSDARG00000038153 None Not determined 1
magi2 MAGI2 ENSDARG00000021590 7 Not determined 4
MAGI2 (2 of 3) MAGI2 ENSDARG00000089764 None Not determined 4
MAGI2 (1 of 3) MAGI2 ENSDARG00000073769 1 Not determined 4
pou5f1 POU5F1B ENSDARG00000044774 2 Normal 1
si:ch211-157c18.2 MAGI2 ENSDARG00000025108 4 Not determined 4
si:ch211-199l3.1 ZDHHC14 ENSDARG00000037069 1 Not determined 1
si:ch211-222e23.8 SACM1L ENSDARG00000015290 None Not determined 1
si:ch211-66g24.1 MAGI2 ENSDARG00000077633 3 Not determined 4
si:dkey-70o15.2 WDFY4 ENSDARG00000077009 8 Not determined 4
usp44 USP44 ENSDARG00000089861 1 Not determined 1
zgc:158642 SACM1L ENSDARG00000059806 4 Not determined 1
zgc:162612 FOXD2 ENSDARG00000079699 None Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • AGBL1
  • C9orf50
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