GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study identifies three new melanoma susceptibility loci.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
atm ATM ENSDARG00000002385 12 Not determined 3
atm ATM ENSDARG00000063465 1 Not determined 3
casp8 CASP8 ENSDARG00000058325 None Not determined 1
casp8l1 CASP8 ENSDARG00000058341 None Not determined 1
casp8l2 CASP8 ENSDARG00000070272 None Not determined 1
cdkn2b CDKN2A ENSDARG00000037262 2 Not determined 25
clptm1l CLPTM1L ENSDARG00000021048 None Not determined 9
LOC562203 MX2 ENSDARG00000051795 3 Not determined 1
mtap MTAP ENSDARG00000037261 1 Not determined 3
mxa MX2 ENSDARG00000021688 1 Not determined 1
mxb MX2 ENSDARG00000004953 None Not determined 1
mxc MX2 ENSDARG00000024789 4 Normal 1
mxd MX2 ENSDARG00000023369 1 Not determined 1
mxe MX2 ENSDARG00000014427 None Not determined 1
mxf MX2 ENSDARG00000026049 None Not determined 1
mxg MX2 ENSDARG00000008019 3 Not determined 1
NP_001122144.1 MX2 ENSDARG00000087845 None Not determined 1
NP_001122273.1 ASIP ENSDARG00000077858 2 Not determined 4
pla2g6 PLA2G6 ENSDARG00000060921 3 Not determined 4
si:ch73-310g9.3 MX2 ENSDARG00000009281 3 Not determined 1
si:dkey-103e21.5 CASP8 ENSDARG00000091926 None Not determined 1
slc45a2 SLC45A2 ENSDARG00000002593 2 Not determined 3
tert TERT ENSDARG00000042637 3 Normal 18
tyr TYR ENSDARG00000039077 None Not determined 9
zgc:194469 CASP8 ENSDARG00000058347 None Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • MC1R
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