GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association analysis of coffee drinking suggests association with CYP1A1/CYP1A2 and NRCAM.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
cplx3a CPLX3 ENSDARG00000062508 None Not determined 3
cplx3b CPLX3 ENSDARG00000089486 None Not determined 3
cyp1a CYP1A1 ENSDARG00000026039 1 Not determined 5
cyp1a CYP1A2 ENSDARG00000026039 1 Not determined 4
cyp1d1 CYP1A1 ENSDARG00000035569 None Not determined 5
cyp1d1 CYP1A2 ENSDARG00000035569 None Not determined 4
lamb4 LAMB4 ENSDARG00000039133 6 Not determined 1
ncalda NCALD ENSDARG00000070688 None Not determined 2
ncaldb NCALD ENSDARG00000011334 None Not determined 2
NP_001165054.1 CPLX3 ENSDARG00000091510 None Not determined 3
NRCAM (2 of 2) NRCAM ENSDARG00000091662 2 Not determined 1
si:dkey-240a12.1 NRCAM ENSDARG00000006396 5 Not determined 1
ULK3 ULK3 ENSDARG00000075200 2 Not determined 4
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