GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
A6H8T0_DANRE SYCP2L ENSDARG00000079190 None Not determined 3
agpat3 AGPAT3 ENSDARG00000036549 4 Not determined 1
DAGLA DAGLA ENSDARG00000062956 2 Not determined 2
elovl2 ELOVL2 ENSDARG00000045414 2 Not determined 4
fads2 FADS2 ENSDARG00000019532 None Not determined 15
fen1 FEN1 ENSDARG00000011404 4 Not determined 4
foxg1a FOXG1 ENSDARG00000070769 2 Not determined 2
foxg1b FOXG1 ENSDARG00000032705 1 Normal 2
foxg1c FOXG1 ENSDARG00000068380 1 Not determined 2
foxq2 FOXG1 ENSDARG00000071394 1 Not determined 2
fth1a FTH1 ENSDARG00000015551 None Not determined 2
fth1b FTH1 ENSDARG00000007975 None Not determined 2
LOC100331248 RAB3IL1 ENSDARG00000007711 1 Not determined 2
LOC100333044 GCKR ENSDARG00000086620 None Not determined 39
LOC100333977 RUNX1 ENSDARG00000087646 None Not determined 3
LOC100334881 STIM2 ENSDARG00000074867 3 Not determined 2
LOC560608 BEST1 ENSDARG00000078331 None Not determined 2
LOC563901 STIM2 ENSDARG00000001776 1 Not determined 2
nfia NFIA ENSDARG00000062420 2 Not determined 6
pdxdc1 PDXDC1 ENSDARG00000007549 2 Not determined 4
runx1 RUNX1 ENSDARG00000025921 None Not determined 3
sb:cb986 INCENP ENSDARG00000077270 3 Not determined 1
si:ch73-85k9.1 TSHZ3 ENSDARG00000087394 3 Not determined 2
si:dkey-79p17.2 LCT ENSDARG00000060671 1 Not determined 1
si:dkey-79p17.3 LCT ENSDARG00000092404 3 Not determined 1
slc10a2 SLC10A2 ENSDARG00000014916 1 Normal 2
tnxb TNXB ENSDARG00000001760 5 Not determined 4
TSHZ3 (1 of 2) TSHZ3 ENSDARG00000015959 4 Not determined 2
unc5a BAI3 ENSDARG00000074543 1 Not determined 4
zgc:110308 MAT2B ENSDARG00000012932 1 Not determined 2
zgc:112263 ELOVL2 ENSDARG00000057365 None Not determined 4
zgc:153394 ELOVL2 ENSDARG00000068551 2 Not determined 4
zgc:163001 BAI3 ENSDARG00000059832 3 Not determined 4
zgc:172145 FTH1 ENSDARG00000045586 None Not determined 2
zgc:172183 C11orf9 ENSDARG00000078676 2 Not determined 3
zgc:175247 FOXG1 ENSDARG00000070053 None Not determined 2
zgc:56095 FTH1 ENSDARG00000018461 None Not determined 2
zgc:73269 C11orf10 ENSDARG00000078785 None Not determined 4

The following reported genes could not be linked automatically to a zebrafish gene:

  • FADS1
  • FADS1
  • FADS1
  • FADS3
  • FADS3
  • FADS3
  • FRD
  • FRD
  • FRD
  • HERV
  • HERV
  • HERV
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