GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study for serum urate concentrations and gout among African Americans identifies genomic risk loci and a novel URAT1 loss-of-function allele.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
LOC100001249 SLC22A12 ENSDARG00000054690 None Not determined 4
LOC797658 RASGRP2 ENSDARG00000087154 None Not determined 1
map4k2l MAP4K2 ENSDARG00000001234 1 Not determined 1
men1 MEN1 ENSDARG00000058021 None Not determined 1
men1 MEN1 ENSDARG00000089456 None Not determined 1
NP_001035448.1 MAP4K2 ENSDARG00000088706 None Not determined 1
NRXN2 (4 of 4) NRXN2 ENSDARG00000076051 None Not determined 2
NRXN2 (1 of 4) NRXN2 ENSDARG00000063606 1 Not determined 2
nrxn2a NRXN2 ENSDARG00000061454 4 Not determined 2
nrxn2b NRXN2 ENSDARG00000063150 1 Not determined 2
pygma PYGM ENSDARG00000055518 2 Not determined 1
pygmb PYGM ENSDARG00000013317 1 Not determined 1
SF1 SF1 ENSDARG00000086479 2 Not determined 1
si:ch211-247j24.2 RASGRP2 ENSDARG00000062328 1 Not determined 1
si:dkey-119m7.4 SLC22A12 ENSDARG00000071049 4 Normal 4
zgc:136354 MAP4K2 ENSDARG00000033444 5 Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • CDC42BPG
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