GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
ACYP2 ACYP2 ENSDARG00000086271 1 Not determined 1
ap1g2 AP1G2 ENSDARG00000054337 None Not determined 1
atf1 ATF1 ENSDARG00000044301 None Not determined 2
cdh5 CDH4 ENSDARG00000075549 7 Not determined 6
CHL1 (1 of 2) CHL1 ENSDARG00000076233 6 Not determined 7
chl1a CHL1 ENSDARG00000077881 4 Not determined 7
chrnb2a CHRNB4 ENSDARG00000008674 3 Not determined 4
dcn DCN ENSDARG00000012066 2 Not determined 1
degs2 DEGS2 ENSDARG00000042544 1 Not determined 1
esr1 ESR1 ENSDARG00000004111 1 Not determined 14
fmo5 FMO1 ENSDARG00000016357 1 Not determined 1
gria1a GRIA1 ENSDARG00000021352 6 Not determined 4
gria1b GRIA1 ENSDARG00000032714 1 Not determined 4
kctd1 KCTD1 ENSDARG00000074056 1 Not determined 1
LOC568566 CHRNB4 ENSDARG00000019983 2 Not determined 4
LOC569662 CHRNB4 ENSDARG00000021392 1 Not determined 4
LOC569664 CLSTN2 ENSDARG00000060638 4 Not determined 4
LOC793236 FMO1 ENSDARG00000069333 1 Not determined 1
MCTP2 (1 of 2) MCTP2 ENSDARG00000073970 2 Not determined 5
NP_571161.1 CDH4 ENSDARG00000015002 2 Not determined 6
plce1 PLCE1 ENSDARG00000089601 5 Not determined 7
PLCE1 (1 of 2) PLCE1 ENSDARG00000087921 4 Not determined 7
plekhg7 PLEKHG7 ENSDARG00000062855 5 Not determined 1
pvalb8 OCM2 ENSDARG00000037790 None Not determined 1
pvalb9 OCM2 ENSDARG00000071601 1 Normal 1
si:ch211-173p18.9 EFCAB1 ENSDARG00000061377 None Not determined 1
si:ch211-195d17.2 E2F6 ENSDARG00000008119 1 Not determined 1
si:ch211-214d15.1 MCTP2 ENSDARG00000001414 3 Not determined 5
si:dkey-174k18.1 PARP4 ENSDARG00000069934 5 Not determined 2
si:dkey-239i20.2 FMO1 ENSDARG00000043518 None Not determined 1
si:dkey-239i20.4 FMO1 ENSDARG00000043514 None Not determined 1
si:dkeyp-55c8.1 CLSTN2 ENSDARG00000060637 4 Not determined 4
sin3aa SIN3A ENSDARG00000079716 2 Not determined 2
sin3ab SIN3A ENSDARG00000059812 3 Not determined 2
TMEFF2 (3 of 3) TMEFF2 ENSDARG00000089012 1 Not determined 2
TMEFF2 (2 of 3) TMEFF2 ENSDARG00000058699 None Not determined 2
tmeff2a TMEFF2 ENSDARG00000051824 4 Not determined 2
zfpm2a ZFPM2 ENSDARG00000040123 2 Not determined 5
zfpm2b ZFPM2 ENSDARG00000035997 2 Not determined 5
zgc:112054 ATF1 ENSDARG00000033660 None Not determined 2
zgc:77439 FMO1 ENSDARG00000039211 4 Not determined 1
znf385b ZNF385B ENSDARG00000006065 None Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • GARNL4
  • PXMP3
  • RSHL1
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