GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
acmsd ACMSD ENSDARG00000062549 None Not determined 2
BST1 BST1 ENSDARG00000086451 None Not determined 4
gak GAK ENSDARG00000094483 None Not determined 5
GAK (2 of 3) GAK ENSDARG00000090654 None Not determined 5
hip1r CCDC62 ENSDARG00000077445 1 Not determined 1
HIP1R (2 of 2) HIP1R ENSDARG00000060627 2 Not determined 1
LOC100151158 GAK ENSDARG00000039384 None Not determined 5
LOC100329854 STK39 ENSDARG00000087203 1 Not determined 2
LRRK2 LRRK2 ENSDARG00000006169 6 Not determined 8
MAPT (2 of 2) MAPT ENSDARG00000087616 3 Not determined 11
mapta MAPT ENSDARG00000089314 2 Not determined 11
mhc2dab HLA-DRB5 ENSDARG00000079105 None Not determined 6
NP_001091732.1 HLA-DRB5 ENSDARG00000071168 1 Not determined 6
si:busm1-104n07.3 HLA-DRB5 ENSDARG00000074510 1 Normal 6
si:busm1-160c18.3 HLA-DRB5 ENSDARG00000053738 None Not determined 6
si:busm1-160c18.3 HLA-DRB5 ENSDARG00000093706 None Not determined 6
si:busm1-194e12.12 HLA-DRB5 ENSDARG00000055447 None Not determined 6
si:busm1-228j01.4 HLA-DRB5 ENSDARG00000088872 2 Not determined 6
si:busm1-228j01.6 HLA-DRB5 ENSDARG00000041705 1 Not determined 6
si:zfos-2070c2.3 HLA-DRB5 ENSDARG00000076307 None Not determined 6
STK39 (2 of 2) STK39 ENSDARG00000088508 1 Not determined 2
syt11a SYT11 ENSDARG00000057913 1 Not determined 1
syt11b SYT11 ENSDARG00000056105 1 Not determined 1
wu:fd58b11 HLA-DRB5 ENSDARG00000054921 None Not determined 6
zgc:153067 HLA-DRB5 ENSDARG00000056330 2 Not determined 6
zgc:154106 MCCC1 ENSDARG00000054046 None Not determined 2
zgc:158784 HIP1R ENSDARG00000059484 5 Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • LAMP3
  • SNCA
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