GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Four novel Loci (19q13, 6q24, 12q24, and 5q14) influence the microcirculation in vivo.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
fgf21 FGF21 ENSDARG00000070492 2 Not determined 3
gata4 GATA4 ENSDARG00000035759 2 Not determined 2
LOC100151130 RASIP1 ENSDARG00000074829 1 Not determined 4
mef2ca MEF2C ENSDARG00000029764 4 Not determined 8
mef2cb MEF2C ENSDARG00000009418 1 Not determined 8
mtmr9 MTMR9 ENSDARG00000015860 3 Not determined 1
nmbr NMBR ENSDARG00000054152 None Not determined 1
ptpn11a PTPN11 ENSDARG00000020334 2 Not determined 8
SH2B3 (1 of 2) SH2B3 ENSDARG00000069958 None Not determined 19
si:dkey-165i4.1 ATXN2 ENSDARG00000052897 5 Normal 10
si:dkeyp-1e8.2 SH2B3 ENSDARG00000093095 None Not determined 19
sox7 PINX1 ENSDARG00000030125 None Not determined 3
sox7 SOX7 ENSDARG00000030125 None Not determined 1
vta1 VTA1 ENSDARG00000013732 1 Not determined 1
xkr6 XKR6 ENSDARG00000043410 1 Not determined 3
XKR6 (2 of 2) XKR6 ENSDARG00000020443 None Not determined 3

The following reported genes could not be linked automatically to a zebrafish gene:

  • CA11
  • FLJ36070
  • FUT1
  • FUT2
  • IZUMO1
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