GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Common genetic variation in the HLA region is associated with late-onset sporadic Parkinson's disease.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
gak GAK ENSDARG00000094483 None Not determined 5
GAK (2 of 3) GAK ENSDARG00000090654 None Not determined 5
LOC100151158 GAK ENSDARG00000039384 None Not determined 5
MAPT (2 of 2) MAPT ENSDARG00000087616 3 Not determined 11
mapta MAPT ENSDARG00000089314 2 Not determined 11
si:busm1-160c18.1 HLA-DRA ENSDARG00000053739 2 Not determined 21
si:busm1-194e12.11 HLA-DRA ENSDARG00000055441 1 Not determined 21
si:busm1-228j01.3 HLA-DRA ENSDARG00000086294 2 Not determined 21
si:busm1-228j01.5 HLA-DRA ENSDARG00000079593 3 Not determined 21
si:ch1073-403i13.1 HLA-DRA ENSDARG00000001832 None Not determined 21
si:ch73-211l2.3 HLA-DRA ENSDARG00000075932 1 Not determined 21
si:dkeyp-2h4.2 HLA-DRA ENSDARG00000031745 None Not determined 21
si:zfos-2070c2.1 HLA-DRA ENSDARG00000070206 None Not determined 21
si:zfos-367g9.1 HLA-DRA ENSDARG00000074816 1 Not determined 21
zgc:123107 HLA-DRA ENSDARG00000020286 None Not determined 21

The following reported genes could not be linked automatically to a zebrafish gene:

  • SNCA
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