GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
adra2a ADRA2A ENSDARG00000040841 4 Not determined 3
C7U131_DANRE PTPRD ENSDARG00000044635 3 Not determined 11
dhh SHH ENSDARG00000037062 None Not determined 2
jmjd1c JMJD1C ENSDARG00000079939 5 Not determined 11
kcnq1 KCNQ1 ENSDARG00000059798 4 Not determined 15
KCNQ1 KCNQ1 ENSDARG00000091599 None Not determined 15
LOC100334126 SGCZ ENSDARG00000090659 3 Not determined 2
LOC571586 JMJD1C ENSDARG00000077805 10 Not determined 11
MRVI1 MRVI1 ENSDARG00000074602 2 Not determined 1
pear1 PEAR1 ENSDARG00000093842 None Not determined 1
PTPRD (2 of 2) PTPRD ENSDARG00000059452 6 Not determined 11
ptprdb PTPRD ENSDARG00000019945 12 Normal 11
shha SHH ENSDARG00000068567 None Not determined 2
shhb SHH ENSDARG00000038867 4 Not determined 2
si:dkey-181c1.7 PEAR1 ENSDARG00000092008 3 Not determined 1
si:dkey-181c1.8 PEAR1 ENSDARG00000060753 4 Not determined 1
si:dkey-82d4.3 NEURL ENSDARG00000069438 2 Not determined 1
zgc:153175 NEURL ENSDARG00000061773 1 Normal 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • GP6
  • HSD17B6
  • MST151
  • PRNP
  • TRIM27
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