GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

A regulatory variant in CCR6 is associated with rheumatoid arthritis susceptibility.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
ccr6a CCR6 ENSDARG00000087474 4 Not determined 7
ccr6b CCR6 ENSDARG00000038968 2 Not determined 7
mhc2dab HLA-DRB1 ENSDARG00000079105 None Not determined 35
NP_001091732.1 HLA-DRB1 ENSDARG00000071168 1 Not determined 35
olig3 OLIG3 ENSDARG00000074253 None Not determined 5
olig4 OLIG3 ENSDARG00000052610 1 Normal 5
si:busm1-104n07.3 HLA-DRB1 ENSDARG00000074510 1 Normal 35
si:busm1-160c18.3 HLA-DRB1 ENSDARG00000053738 None Not determined 35
si:busm1-160c18.3 HLA-DRB1 ENSDARG00000093706 None Not determined 35
si:busm1-194e12.12 HLA-DRB1 ENSDARG00000055447 None Not determined 35
si:busm1-228j01.4 HLA-DRB1 ENSDARG00000088872 2 Not determined 35
si:busm1-228j01.6 HLA-DRB1 ENSDARG00000041705 1 Not determined 35
si:ch211-274c22.6 TNFAIP3 ENSDARG00000027777 5 Not determined 11
si:zfos-2070c2.3 HLA-DRB1 ENSDARG00000076307 None Not determined 35
stat4 STAT4 ENSDARG00000028731 3 Not determined 19
wu:fd58b11 HLA-DRB1 ENSDARG00000054921 None Not determined 35
zgc:153067 HLA-DRB1 ENSDARG00000056330 2 Not determined 35
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