GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study identifies variants at CSF1, OPTN and TNFRSF11A as genetic risk factors for Paget's disease of bone.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
cd40 TNFRSF11A ENSDARG00000054968 None Not determined 6
LOC100333821 TNFRSF11A ENSDARG00000087804 None Not determined 6
LOC795858 TNFRSF11A ENSDARG00000095718 None Not determined 6
ngfr TNFRSF11A ENSDARG00000057143 2 Not determined 6
optn OPTN ENSDARG00000002663 None Not determined 2
si:ch211-261n11.7 TNFRSF11A ENSDARG00000068966 None Not determined 6
si:ch211-261n11.8 TNFRSF11A ENSDARG00000089901 None Not determined 6
si:dkey-23c22.5 TNFRSF11A ENSDARG00000092892 1 Not determined 6
si:dkey-23c22.6 TNFRSF11A ENSDARG00000068991 None Not determined 6
si:dkey-23c22.7 TNFRSF11A ENSDARG00000095193 None Not determined 6
si:dkey-23c22.9 TNFRSF11A ENSDARG00000092381 None Not determined 6
zgc:153631 TNFRSF11A ENSDARG00000068993 1 Not determined 6
zgc:153759 TNFRSF11A ENSDARG00000068969 None Not determined 6
zgc:158862 TNFRSF11A ENSDARG00000068963 None Not determined 6

The following reported genes could not be linked automatically to a zebrafish gene:

  • CSF1
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