GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study of systemic sclerosis identifies CD247 as a new susceptibility locus.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
cd247l CD247 ENSDARG00000077240 1 Not determined 6
irf5 IRF5 ENSDARG00000045681 None Not determined 14
mhc2dab HLA-DQB1 ENSDARG00000079105 None Not determined 24
NP_001091732.1 HLA-DQB1 ENSDARG00000071168 1 Not determined 24
si:busm1-104n07.3 HLA-DQB1 ENSDARG00000074510 1 Normal 24
si:busm1-160c18.3 HLA-DQB1 ENSDARG00000053738 None Not determined 24
si:busm1-160c18.3 HLA-DQB1 ENSDARG00000093706 None Not determined 24
si:busm1-194e12.12 HLA-DQB1 ENSDARG00000055447 None Not determined 24
si:busm1-228j01.4 HLA-DQB1 ENSDARG00000088872 2 Not determined 24
si:busm1-228j01.6 HLA-DQB1 ENSDARG00000041705 1 Not determined 24
si:zfos-2070c2.3 HLA-DQB1 ENSDARG00000076307 None Not determined 24
stat4 STAT4 ENSDARG00000028731 3 Not determined 19
wu:fd58b11 HLA-DQB1 ENSDARG00000054921 None Not determined 24
zgc:153067 HLA-DQB1 ENSDARG00000056330 2 Not determined 24

The following reported genes could not be linked automatically to a zebrafish gene:

  • TNPO
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